def test_get_workspace_diff(app, default_user,
sample_yadage_workflow_in_db,
sample_serial_workflow_in_db,
tmp_shared_volume_path,
sample_workflow_workspace):
"""Test get workspace differences."""
# create the workspaces for the two workflows
workspace_path_a = next(sample_workflow_workspace(
str(sample_serial_workflow_in_db.id_)))
workspace_path_b = next(sample_workflow_workspace(
str(sample_yadage_workflow_in_db.id_)))
sample_serial_workflow_in_db.get_workspace = lambda: str(
sample_serial_workflow_in_db.id_)
sample_yadage_workflow_in_db.get_workspace = lambda: str(
sample_yadage_workflow_in_db.id_)
# modify the contents in one file
with open(
os.path.join(
workspace_path_a, 'data',
'World_historical_and_predicted_populations_in_percentage.csv'
), 'a') as f:
f.write('An extra line')
f.flush()
with app.test_client() as client:
res = client.get(url_for(
'api.get_workflow_diff',
workflow_id_or_name_a=sample_serial_workflow_in_db.id_,
workflow_id_or_name_b=sample_yadage_workflow_in_db.id_),
query_string={'user': default_user.id_},
content_type='application/json')
assert res.status_code == 200
response_data = json.loads(res.get_data(as_text=True))
assert 'An extra line' in response_data['workspace_listing']
def test_calculate_file_access_time(sample_workflow_workspace): # noqa: F811
"""Test calculate_file_access_time."""
sample_workflow_workspace_path = next(sample_workflow_workspace("sample"))
access_times = calculate_file_access_time(sample_workflow_workspace_path)
all_file_paths = list(Path(sample_workflow_workspace_path).rglob("*.*"))
for file_path in all_file_paths:
assert str(file_path) in access_times
def test_calculate_hash_of_dir(sample_workflow_workspace):
"""Test calculate_hash_of_dir."""
non_existing_dir_hash = calculate_hash_of_dir('a/b/c')
assert non_existing_dir_hash == -1
sample_workflow_workspace_path = next(sample_workflow_workspace('sample'))
dir_hash = calculate_hash_of_dir(sample_workflow_workspace_path)
assert dir_hash == '8d287a3e2240b1762862d485a424363c'
include_only_path = os.path.join(sample_workflow_workspace_path, 'code',
'worldpopulation.ipynb')
hash_of_single_file = calculate_hash_of_dir(sample_workflow_workspace_path,
[include_only_path])
assert hash_of_single_file == '18ce945e21ab4db472525abe1e0f8080'
empty_dir_hash = calculate_hash_of_dir(sample_workflow_workspace_path, [])
md5_hash = md5()
assert empty_dir_hash == md5_hash.hexdigest()
def test_calculate_hash_of_dir(sample_workflow_workspace):
"""Test calculate_hash_of_dir."""
non_existing_dir_hash = calculate_hash_of_dir("a/b/c")
assert non_existing_dir_hash == -1
sample_workflow_workspace_path = next(sample_workflow_workspace("sample"))
dir_hash = calculate_hash_of_dir(sample_workflow_workspace_path)
assert dir_hash == "8d287a3e2240b1762862d485a424363c"
include_only_path = os.path.join(sample_workflow_workspace_path, "code",
"worldpopulation.ipynb")
hash_of_single_file = calculate_hash_of_dir(sample_workflow_workspace_path,
[include_only_path])
assert hash_of_single_file == "18ce945e21ab4db472525abe1e0f8080"
empty_dir_hash = calculate_hash_of_dir(sample_workflow_workspace_path, [])
md5_hash = md5()
assert empty_dir_hash == md5_hash.hexdigest()
def test_calculate_hash_of_dir(sample_workflow_workspace): # noqa: F811
"""Test calculate_hash_of_dir."""
non_existing_dir_hash = calculate_hash_of_dir("a/b/c")
assert non_existing_dir_hash == -1
test_workspace_path = pkg_resources.resource_filename(
"pytest_reana", "test_workspace")
sample_workflow_workspace_path = next(sample_workflow_workspace("sample"))
shutil.rmtree(sample_workflow_workspace_path)
shutil.copytree(test_workspace_path, sample_workflow_workspace_path)
dir_hash = calculate_hash_of_dir(sample_workflow_workspace_path)
assert dir_hash == "cb2669b4d7651aa717b6952fce85575f"
include_only_path = os.path.join(sample_workflow_workspace_path, "code",
"worldpopulation.ipynb")
hash_of_single_file = calculate_hash_of_dir(sample_workflow_workspace_path,
[include_only_path])
assert hash_of_single_file == "18ce945e21ab4db472525abe1e0f8080"
empty_dir_hash = calculate_hash_of_dir(sample_workflow_workspace_path, [])
md5_hash = md5()
assert empty_dir_hash == md5_hash.hexdigest()
shutil.rmtree(sample_workflow_workspace_path)
