def get_extension():
subprocess.call(
[sys.executable, os.path.join(cdir, "setup.py"), ""], cwd=cdir)
ext = []
for s in ("LUsolve", ):
ext.append(
Extension("spectralDNS.shen.{0}".format(s),
sources=[os.path.join(sdir, '{0}.pyx'.format(s))],
language="c++"))
for e in ext:
e.extra_link_args.extend(["-std=c++11"])
for s in [files for files in os.listdir(cdir) if files.endswith('.pyx')]:
ext.append(
Extension("spectralDNS.optimization.{0}".format(s[:-4]),
sources=[os.path.join(cdir, '{0}'.format(s))],
language="c++"))
try:
from pythran import PythranExtension
ext.append(
PythranExtension(
'spectralDNS.optimization.pythran_maths',
sources=['spectralDNS/optimization/pythran_maths.py']))
except ImportError:
print("Disabling Pythran support, package not available")
return ext
language="c++", define_macros=define_macros))
[e.extra_link_args.extend(["-std=c++11"]) for e in ext]
[e.include_dirs.extend([get_include()]) for e in ext]
ext0 = []
ff = [files for files in os.listdir(cdir) if files.endswith('.pyx')]
for s in ff:
ext0 += cythonize(Extension("spectralDNS.optimization.{0}".format(s[:-4]),
sources=[os.path.join(cdir, '{0}'.format(s))],
language="c++", define_macros=define_macros))
[e.include_dirs.extend([get_include()]) for e in ext0]
ext += ext0
try:
from pythran import PythranExtension
ext.append(PythranExtension('spectralDNS.optimization.pythran_maths',
sources=['spectralDNS/optimization/pythran_maths.py']))
except ImportError:
print("Disabling Pythran support, package not available")
pass
cmdclass = {'build_ext': build_ext_subclass}
else:
# Remove generated files
for name in os.listdir(cdir):
if "single" in name or "double" in name:
os.remove(os.path.join(cdir, name))
setup(name = "spectralDNS",
version = "%d.%d" % (major, minor),
description = "spectralDNS -- Spectral Navier-Stokes solvers framework",
from distutils.core import setup, Extension
from pythran import PythranExtension
setup(name = 'demo2',
version = '1.0',
description = 'This is another demo package',
packages = ['demo2'],
ext_modules = [PythranExtension('demo2.a', sources = ['a.py'])])
#!/usr/bin/env python
# encoding: UTF-8
from setuptools import setup, find_packages, dist
# Declare the dependency
dist.Distribution(dict(setup_requires='pythran'))
# Pythran modules
from pythran import PythranExtension
module_parse = PythranExtension('gaussdca._load_data', sources=['src/gaussdca/_load_data.py'])
module_gdca = PythranExtension('gaussdca._gdca', sources=['src/gaussdca/_gdca.py'],
extra_compile_args=['-fopenmp', '-ftree-vectorize'],
extra_link_args=['-fopenmp'])
# Main setup:
setup(name='pyGaussDCA', version='0.1.4',
description='Fast implementation of GaussDCA',
url='https://github.com/ElofssonLab/pyGaussDCA/',
author='David Menéndez Hurtado',
author_email='*****@*****.**',
license='GPLv3',
packages=find_packages('src'),
package_dir={'': 'src'},
package_data={'gaussdca.data': ['tests/data/*.a3m']},
include_package_data=True,
ext_modules=[module_parse, module_gdca],
install_requires=['numpy', 'scipy', 'pythran>=0.8.6'],
setup_requires=['pytest-runner'],
tests_require=['pytest'],
package_dir={'': 'nw_align_probs'},
version='0.4',
license='MIT',
description=
'Needleman-Wunsch alignment of text to logprobs frames from ASR models',
author='Vid Klopcic',
author_email='*****@*****.**',
url='https://github.com/vidklopcic/nw_align_probs',
download_url=
'https://github.com/vidklopcic/nw_align_probs/archive/refs/tags/v_04.tar.gz',
keywords=['Needleman-Wunsch', 'global alignment', 'ASR text alignment'],
install_requires=[
'numpy',
],
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'Topic :: Text Processing',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.8',
],
ext_modules=[
PythranExtension("nw_align_probs",
["nw_align_probs/nw_align_probs.py"])
],
)
from distutils.core import setup, Extension
from pythran import PythranExtension
module1 = PythranExtension('demo', sources = ['a.py'])
setup(name = 'demo',
version = '1.0',
description = 'This is a demo package',
ext_modules = [module1])