def run(parameters, verbose=False):
"""
run: Answers a http request depending on the provided parameters.
Parameters can be
XML=FILENAME
DIR=DIRNAME
ALIG=NAME
@param parameters:
"""
from pytom.basic.structures import ParticleList
from pytom.tools.files import checkDirExists, checkFileExists
if verbose:
print("Parsing particleList request!")
splitParameters = parameters.split('&')
if splitParameters.__class__ == list:
if verbose:
print(splitParameters)
for i in range(len(splitParameters)):
parameter = splitParameters[i]
split = parameter.split('=')
keyword = split[0]
argument = split[1]
if verbose:
print('Keyword : ', keyword)
print('Arguments : ', argument)
if keyword == 'XML':
from pytom.tools.files import readStringFile, getPytomPath
import io
from lxml import etree
if not checkFileExists(argument):
raise IOError('File not found!')
pl = ParticleList('/')
pl.fromXMLFile(argument)
xsltString = readStringFile(
getPytomPath() + '/frontend/html/xslt/ParticleList.xsl')
xsltTransform = io.StringIO(xsltString)
transformed = pl.xsltTransform(xsltTransform)
return etree.tostring(transformed, pretty_print=True)
elif keyword == 'DIR':
from pytom.tools.files import checkDirExists, getPytomPath, readStringFile
import io
from lxml import etree
if not checkDirExists(argument):
raise IOError('File not found!')
pl = ParticleList(argument)
pl.loadDirectory()
xsltString = readStringFile(
getPytomPath() + '/frontend/html/xslt/ParticleList.xsl')
xsltTransform = io.StringIO(xsltString)
transformed = pl.xsltTransform(xsltTransform)
return etree.tostring(transformed, pretty_print=True)
elif keyword == 'ALIG':
from pytom.tools.files import checkDirExists, getPytomPath, readStringFile
import io
from lxml import etree
if not checkDirExists(argument):
raise IOError('File not found!')
pl = ParticleList(argument)
pl.fromAlignmentFile(argument)
xsltString = readStringFile(
getPytomPath() + '/frontend/html/xslt/ParticleList.xsl')
xsltTransform = io.StringIO(xsltString)
transformed = pl.xsltTransform(xsltTransform)
return etree.tostring(transformed, pretty_print=True)
elif splitParameters.__class__ == str:
if verbose:
print(splitParameters)
