def _selectItemByClass(self, item, className):
if not item.node.isRoot():
data = item.node.pointer.get()
self.toggleItemSelection(
item, isinstance(data,
Domain.getObjects()[className]))
def _loadSet(self, dbName, dbPreffix):
from pyworkflow.mapper.sqlite import SqliteFlatDb
db = SqliteFlatDb(dbName=dbName, tablePrefix=dbPreffix)
if dbPreffix:
setClassName = "SetOf%ss" % db.getSelfClassName()
else:
setClassName = db.getProperty('self') # get the set class name
# FIXME: Check why the import is here
from pyworkflow.em import Domain
setObj = Domain.getObjects()[setClassName](filename=dbName, prefix=dbPreffix)
return setObj
def evalParamCondition(self, paramName):
"""Evaluate if a condition is True for a give param
with the values of a particular Protocol"""
param = self.getParam(paramName)
if not param.hasCondition():
return True
condStr = param.condition.get()
localDict = {}
globalDict = dict(globals())
# FIXME: Check why this import is here
from pyworkflow.em import Domain
globalDict.update(Domain.getObjects())
for t in param._conditionParams:
if self.hasParam(t) or self._protocol.hasAttribute(t):
localDict[t] = self._protocol.getAttributeValue(t)
return eval(condStr, globalDict, localDict)
def checkPlugins():
""" Discover all plugins and print some info.
"""
plugins = Domain.getPlugins()
env = createEnvironment()
print("Plugins:")
for k, plugin in plugins.iteritems():
print("-", plugin.__name__)
plugin.Plugin.defineBinaries(env)
print("\nDefined binaries: ")
print(env.printHelp())
if args.verbosity > 0:
print("Objects")
pwutils.prettyDict(Domain.getObjects())
print("Protocols")
pwutils.prettyDict(Domain.getProtocols())
print("Viewers")
pwutils.prettyDict(Domain.getViewers())
return ''
n = len(sys.argv)
if n > 4:
usage("Incorrect number of input parameters")
if n == 1: # List all plugins
plugins = Domain.getPlugins()
print("Plugins:")
for k, v in iteritems(plugins):
print("-", k)
print("Objects")
pwutils.prettyDict(Domain.getObjects())
print("Protocols")
pwutils.prettyDict(Domain.getProtocols())
print("Viewers")
pwutils.prettyDict(Domain.getViewers())
elif n == 2:
if sys.argv[1] in ['-h', '--help', 'help']:
usage("Printing help message")
pluginName = sys.argv[1]
plugin = Domain.getPlugin(pluginName)
print("Plugin: %s" % pluginName)
for subName in [