def test_plot_line(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(E=200 * 10**9, v=0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.0001
merged = ordered_merge([self.data, data2], [0, 1])
# Try a few slice extract options
phi_names = ['strain', 'stress', 'shear strain', 'shear stress']
az_names = [
'peaks', 'fwhm', 'strain', 'stress', 'peak err', 'fwhm err',
'strain err'
]
phi_, az_ = [-2 * np.pi], [20]
pnt_, theta_ = [(-0.2, 0.2)], [0, -np.pi / 3]
d_ = [self.data, merged]
iterator = product(d_, phi_names, phi_, pnt_, theta_)
for d1, name, phi, pnt, theta in iterator:
d1.plot_line(name, phi=phi, pnt=pnt, theta=theta)
plt.close()
iterator = product(d_, az_names, phi_, pnt_, theta_)
for d2, name, az, pnt, theta in iterator:
d2.plot_line(name, az_idx=az, pnt=pnt, theta=theta)
plt.close()
def test_plot_slice(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(E=200 * 10**9, v=0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.0001
merged = ordered_merge([self.data, data2], [0, 1])
# Try a few slice extract options
phi_names = ['strain', 'stress', 'shear strain', 'shear stress']
az_names = [
'peaks', 'fwhm', 'strain', 'stress', 'peak err', 'fwhm err',
'strain err'
]
phi_ = [-2.5 * np.pi]
az_ = [20]
d_ = [self.data, merged]
for d1, name, phi in product(d_, phi_names, phi_):
d1.plot_slice(name, phi=phi)
plt.close()
for d2, name, az in product(d_, az_names, az_):
d2.plot_slice(name, az_idx=az)
plt.close()
def test_save_to_text(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(200 * 10 ** 9, 0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.00001
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice("shear strain", phi=np.pi / 3)
az_lst = ["fwhm", "fwhm error", "peaks", "peaks error", "strain", "strain error", "stress"]
phi_lst = ["strain", "shear strain", "stress", "shear stress"]
merged.save_to_txt("pyxe/data/test.csv", az_lst, az_idx=2)
merged.save_to_txt("pyxe/data/test.csv", phi_lst, phi=-np.pi / 3)
def test_real():
fine = EDI12(fpath_1)
coarse = EDI12(fpath_2)
for data in [fine, coarse]:
data.peak_fit(3.1, 0.25)
data.calculate_strain(3.1)
data.material_parameters(E=200*10**9, v=0.3)
merged = ordered_merge([fine, coarse], [0, 1], pad=0.2)
merged.plot_slice('stress', phi=np.pi/3)
return fine, coarse, merged
def test_save_to_text(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(200*10**9, 0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.00001
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice('shear strain', phi=np.pi / 3)
az_lst = ['fwhm', 'fwhm error', 'peaks', 'peaks error',
'strain', 'strain error', 'stress']
phi_lst = ['strain', 'shear strain', 'stress', 'shear stress']
merged.save_to_txt('pyxe/data/test.csv', az_lst, az_idx=2)
merged.save_to_txt('pyxe/data/test.csv', phi_lst, phi=-np.pi/3)
def test_ordered_merge(self):
self.data.calculate_strain(self.q0)
data2 = copy.deepcopy(self.data)
pad = 0.35
shift = 1.00001
data2.d1 += shift
added = np.sum(data2.d1 > (1 + pad))
merged = ordered_merge([self.data, data2], [0, 1], pad)
assert np.array_equal(merged.phi, self.data.phi)
assert merged.d1.size == added + self.data.d1.size, (
merged.d1.size, added, self.data.d1.size)
def test_ordered_merge(self):
self.data.calculate_strain(self.q0)
data2 = copy.deepcopy(self.data)
pad = 0.35
shift = 1.00001
data2.d1 += shift
added = np.sum(data2.d1 > (1 + pad))
merged = ordered_merge([self.data, data2], [0, 1], pad)
assert np.array_equal(merged.phi, self.data.phi)
err = (merged.d1.size, added, self.data.d1.size)
assert merged.d1.size == added + self.data.d1.size, err
def test_save_to_text(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(200 * 10**9, 0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.00001
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice('shear strain', phi=np.pi / 3)
az_lst = [
'fwhm', 'fwhm error', 'peaks', 'peaks error', 'strain',
'strain error', 'stress'
]
phi_lst = ['strain', 'shear strain', 'stress', 'shear stress']
merged.save_to_txt('pyxe/data/test.csv', az_lst, az_idx=2)
merged.save_to_txt('pyxe/data/test.csv', phi_lst, phi=-np.pi / 3)
def test_save_reload(self):
self.data.calculate_strain(self.q0)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.00001
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice("shear strain", phi=np.pi / 3)
plt.close()
merged.save_to_hdf5(fpath="pyxe/data/energy_test_pyxe.h5", overwrite=True)
merged_reload = PeakAnalysis(fpath="pyxe/data/energy_test_pyxe.h5")
merged_reload_b = DataViz(fpath="pyxe/data/energy_test_pyxe.h5")
merged_reload.plot_slice("shear strain", phi=np.pi / 3)
plt.close()
merged_reload_b.plot_slice("shear strain", phi=np.pi / 3)
plt.close()
assert np.array_equal(merged.peaks, merged_reload.peaks)
def test_save_reload(self):
self.data.calculate_strain(self.q0)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.00001
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice('shear strain', phi=np.pi / 3)
plt.close()
merged.save_to_hdf5(fpath='pyxe/data/energy_test_pyxe.h5',
overwrite=True)
merged_reload = PeakAnalysis(fpath='pyxe/data/energy_test_pyxe.h5')
merged_reload_b = DataViz(fpath='pyxe/data/energy_test_pyxe.h5')
merged_reload.plot_slice('shear strain', phi=np.pi / 3)
plt.close()
merged_reload_b.plot_slice('shear strain', phi=np.pi / 3)
plt.close()
assert np.array_equal(merged.peaks, merged_reload.peaks)
def test_plot_slice(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(E=200 * 10 ** 9, v=0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.0001
merged = ordered_merge([self.data, data2], [0, 1])
# Try a few slice extract options
phi_names = ["strain", "stress", "shear strain", "shear stress"]
az_names = ["peaks", "fwhm", "strain", "stress", "peak err", "fwhm err", "strain err"]
phi_ = [-2.5 * np.pi]
az_ = [20]
d_ = [self.data, merged]
for d1, name, phi in product(d_, phi_names, phi_):
d1.plot_slice(name, phi=phi)
plt.close()
for d2, name, az in product(d_, az_names, az_):
d2.plot_slice(name, az_idx=az)
plt.close()
def test_plot_line(self):
self.data.calculate_strain(self.q0)
self.data.material_parameters(E=200 * 10 ** 9, v=0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.0001
merged = ordered_merge([self.data, data2], [0, 1])
# Try a few slice extract options
phi_names = ["strain", "stress", "shear strain", "shear stress"]
az_names = ["peaks", "fwhm", "strain", "stress", "peak err", "fwhm err", "strain err"]
phi_, az_ = [-2 * np.pi], [20]
pnt_, theta_ = [(-0.2, 0.2)], [0, -np.pi / 3]
d_ = [self.data, merged]
iterator = product(d_, phi_names, phi_, pnt_, theta_)
for d1, name, phi, pnt, theta in iterator:
d1.plot_line(name, phi=phi, pnt=pnt, theta=theta)
plt.close()
iterator = product(d_, az_names, phi_, pnt_, theta_)
for d2, name, az, pnt, theta in iterator:
d2.plot_line(name, az_idx=az, pnt=pnt, theta=theta)
plt.close()
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice('shear strain', phi=np.pi / 3)
az_lst = [
'fwhm', 'fwhm error', 'peaks', 'peaks error', 'strain',
'strain error', 'stress'
]
phi_lst = ['strain', 'shear strain', 'stress', 'shear stress']
merged.save_to_txt('pyxe/data/test.csv', az_lst, az_idx=2)
merged.save_to_txt('pyxe/data/test.csv', phi_lst, phi=-np.pi / 3)
if __name__ == '__main__':
data, q0 = integration()
data.peak_fit(3.1, 1.)
q0.peak_fit(3.1, 1.)
data.calculate_strain(q0)
data.material_parameters(200 * 10**9, 0.3, G=None)
data.plot_intensity()
data.plot_strain_fit()
shift = 1.00001
data2 = copy.deepcopy(data)
data2.d1 += shift
merged = ordered_merge([data, data2], [0, 1], 0)
merged.plot_slice('shear strain', phi=0)
#plt.show()
merged.save_to_hdf5(overwrite=True)
merged_reload = PeakAnalysis('_pyxe.h5')
#print(merged_reload.analysis_state.decode())
merged_reload.plot_slice('shear strain', phi=0)
plt.show()
self.data.material_parameters(200 * 10 ** 9, 0.3)
data2 = copy.deepcopy(self.data)
data2.d1 += 1.00001
merged = ordered_merge([self.data, data2], [0, 1], 0.1)
merged.plot_slice("shear strain", phi=np.pi / 3)
az_lst = ["fwhm", "fwhm error", "peaks", "peaks error", "strain", "strain error", "stress"]
phi_lst = ["strain", "shear strain", "stress", "shear stress"]
merged.save_to_txt("pyxe/data/test.csv", az_lst, az_idx=2)
merged.save_to_txt("pyxe/data/test.csv", phi_lst, phi=-np.pi / 3)
if __name__ == "__main__":
data, q0 = integration()
data.peak_fit(3.1, 1.0)
q0.peak_fit(3.1, 1.0)
data.calculate_strain(q0)
data.material_parameters(200 * 10 ** 9, 0.3, G=None)
data.plot_intensity()
data.plot_strain_fit()
shift = 1.00001
data2 = copy.deepcopy(data)
data2.d1 += shift
merged = ordered_merge([data, data2], [0, 1], 0)
merged.plot_slice("shear strain", phi=0)
# plt.show()
merged.save_to_hdf5(overwrite=True)
merged_reload = PeakAnalysis("_pyxe.h5")
# print(merged_reload.analysis_state.decode())
merged_reload.plot_slice("shear strain", phi=0)
plt.show()