def test_aligned_dna_fasta_format_unaligned(self):
filepath = self.get_data_path('dna-sequences.fasta')
format = AlignedDNAFASTAFormat(filepath, mode='r')
with self.assertRaisesRegex(ValidationError,
'line 4.*length 90.*length 65'):
format.validate()
def test_aligned_dna_fasta_format_validate_negative(self):
filepath = self.get_data_path('not-dna-sequences')
format = AlignedDNAFASTAFormat(filepath, mode='r')
with self.assertRaisesRegex(ValueError, 'AlignedDNAFASTA'):
format.validate()
def test_aligned_dna_fasta_format_validate_positive(self):
filepath = self.get_data_path('aligned-dna-sequences.fasta')
format = AlignedDNAFASTAFormat(filepath, mode='r')
format.validate()
def test_aligned_dna_fasta_format_validate_negative(self):
filepath = self.get_data_path('not-dna-sequences')
format = AlignedDNAFASTAFormat(filepath, mode='r')
with self.assertRaisesRegex(ValidationError, 'AlignedDNAFASTA'):
format.validate()
def test_aligned_dna_fasta_format_validate_positive(self):
filepath = self.get_data_path('aligned-dna-sequences.fasta')
format = AlignedDNAFASTAFormat(filepath, mode='r')
format.validate()