def test_biom_v100_format_to_pandas_data_frame(self): input, obs = self.transform_format(BIOMV100Format, pd.DataFrame, filename='feature-table_v100.biom') table = _parse_biom_table_v100(input) df = _table_to_dataframe(table) assert_frame_equal(df, obs)
def test_biom_v100_format_to_metadata(self): input, obs = self.transform_format(BIOMV100Format, qiime2.Metadata, filename='feature-table_v100.biom') table = _parse_biom_table_v100(input) df = _table_to_metadata(table) self.assertEqual(df, obs)
def test_biom_v100_format_to_pandas_data_frame(self): input, obs = self.transform_format(BIOMV100Format, pd.DataFrame, filename='feature-table_v100.biom') table = _parse_biom_table_v100(input) df = _table_to_dataframe(table) assert_frame_equal(df, obs)
def test_biom_v100_format_to_metadata(self): input, obs = self.transform_format(BIOMV100Format, qiime2.Metadata, filename='feature-table_v100.biom') table = _parse_biom_table_v100(input) df = _table_to_metadata(table) self.assertEqual(df, obs)