Python _parse_biom_table_v100 Exemples

Exemple #1

Fichier : test_transformer.py Projet : qiime2/q2-types

    def test_biom_v100_format_to_pandas_data_frame(self):
        input, obs = self.transform_format(BIOMV100Format, pd.DataFrame,
                                           filename='feature-table_v100.biom')

        table = _parse_biom_table_v100(input)
        df = _table_to_dataframe(table)

        assert_frame_equal(df, obs)

Exemple #2

Fichier : test_transformer.py Projet : qiime2/q2-types

    def test_biom_v100_format_to_metadata(self):
        input, obs = self.transform_format(BIOMV100Format, qiime2.Metadata,
                                           filename='feature-table_v100.biom')

        table = _parse_biom_table_v100(input)
        df = _table_to_metadata(table)

        self.assertEqual(df, obs)

Exemple #3

    def test_biom_v100_format_to_pandas_data_frame(self):
        input, obs = self.transform_format(BIOMV100Format,
                                           pd.DataFrame,
                                           filename='feature-table_v100.biom')

        table = _parse_biom_table_v100(input)
        df = _table_to_dataframe(table)

        assert_frame_equal(df, obs)

Exemple #4

    def test_biom_v100_format_to_metadata(self):
        input, obs = self.transform_format(BIOMV100Format,
                                           qiime2.Metadata,
                                           filename='feature-table_v100.biom')

        table = _parse_biom_table_v100(input)
        df = _table_to_metadata(table)

        self.assertEqual(df, obs)