def get_click_options(self):
import q2cli
import q2cli.util
if self.type is bool:
no_name = self.prefix + 'no_' + self.name
cli_no_name = q2cli.util.to_cli_name(no_name)
name = '--' + self.cli_name + '/--' + cli_no_name
# click.Option type is determined implicitly for flags with
# secondary options, and explicitly passing type=bool results in a
# TypeError, so we pass type=None (the default).
option_type = None
else:
name = '--' + self.cli_name
option_type = self.type
if self.default is NoDefault:
requirement = '[required]'
elif self.default is None:
requirement = '[optional]'
else:
requirement = '[default: %s]' % self.default
# Pass `default=None` and `show_default=False` to `click.Option`
# because the handlers are responsible for resolving missing values and
# supplying defaults. Telling Click about the default value here makes
# it impossible to determine whether the user supplied or omitted a
# value once the handlers are invoked.
option = q2cli.Option([name],
type=option_type,
default=None,
show_default=False,
help='')
yield self._add_description(option, requirement)
def get_click_options(self):
import click
import q2cli
yield q2cli.Option(['--' + self.cli_name],
type=click.Path(exists=True,
dir_okay=False,
file_okay=True,
readable=True),
help='Use config file for command options')
def get_click_options(self):
import click
import q2cli
yield q2cli.Option(['--' + self.cli_name],
type=click.Path(exists=False,
dir_okay=True,
file_okay=False,
writable=True),
help='Output unspecified results to a directory')
def get_click_options(self):
import q2cli
type = q2cli.core.ResultPath(self.repr,
exists=False,
file_okay=True,
dir_okay=False,
writable=True)
option = q2cli.Option(['--' + self.cli_name], type=type, help="")
yield self._add_description(option,
'[required if not passing --output-dir]')
def get_click_options(self):
import q2cli
# `is_flag` will set the default to `False`, but `self._locate_value`
# needs to distinguish between the presence or absence of the flag
# provided by the user.
yield q2cli.Option(['--' + self.cli_name],
is_flag=True,
default=None,
help='Silence output if execution is successful '
'(silence is golden). [default: %s]' %
self.default)
def get_click_options(self):
import q2cli
# `is_flag` will set the default to `False`, but `self._locate_value`
# needs to distinguish between the presence or absence of the flag
# provided by the user.
yield q2cli.Option(
['--' + self.cli_name],
is_flag=True,
default=None,
help='Display verbose output to stdout and/or stderr during '
'execution of this action. [default: %s]' % self.default)
def get_click_options(self):
import q2cli
import q2cli.core
type = q2cli.core.ResultPath(repr=self.repr,
exists=True,
file_okay=True,
dir_okay=False,
readable=True)
if self.default is None:
requirement = '[optional]'
else:
requirement = '[required]'
option = q2cli.Option(['--' + self.cli_name], type=type, help="")
yield self._add_description(option, requirement)
def get_click_options(self):
import q2cli
name = '--' + self.cli_name
type = str
help = 'Column from metadata file or artifact viewable as metadata.'
if self.default is None:
requirement = '[optional]'
else:
requirement = '[required]'
option = q2cli.Option([name], type=type, help=help, metavar=self.repr)
yield from self.metadata_handler.get_click_options()
yield self._add_description(option, requirement)
def get_click_options(self):
import click
import q2cli
import q2cli.core
name = '--' + self.cli_name
type = click.Path(exists=True,
file_okay=True,
dir_okay=False,
readable=True)
type = q2cli.core.MultipleType(type)
help = ('Metadata file or artifact viewable as metadata. This '
'option may be supplied multiple times to merge metadata.')
if self.default is None:
requirement = '[optional]'
else:
requirement = '[required]'
option = q2cli.Option([name], type=type, help=help, multiple=True)
yield self._add_description(option, requirement)
