def initializeAfterStartup(self):
import shutil
pluginDir = os.path.dirname(__file__)
logging.info('This plugin dir: {}'.format(pluginDir))
if os.path.exists(pluginDir + '/client_api.py'):
os.remove(pluginDir + '/TDIOClientAPI/client_api.py')
if os.path.exists(pluginDir + '/client_api.pyc'):
os.remove(pluginDir + '/TDIOClientAPI/client_api.pyc')
if os.path.exists(
pluginDir +
'/TDIOClientAPI/__pycache__/client_api.cpython-36.pyc'):
os.remove(pluginDir +
'/TDIOClientAPI/__pycache__/client_api.cpython-36.pyc')
import qSlicerSegmentationsEditorEffectsPythonQt as qSlicerSegmentationsEditorEffects
self.instance = qSlicerSegmentationsEditorEffects.qSlicerSegmentEditorScriptedEffect(
None)
effectFilename = os.path.join(
os.path.dirname(__file__),
self.__class__.__name__ + 'Lib/SegmentEditorEffect.py')
self.instance.setPythonSource(effectFilename.replace('\\', '/'))
self.instance.self().register()
if not slicer.app.commandOptions().noMainWindow:
self.settingsPanel = SegmentEditorTDIOSettingsPanel()
slicer.app.settingsDialog().addPanel('TrainingData.io',
self.settingsPanel)
def __init__(self, parent):
ScriptedLoadableModule.__init__(self, parent)
parent.title = "Segment Editor PET Tumor Segmentation"
parent.categories = ["Developer Tools.Segment Editor Extensions"]
parent.contributors = [
"Christian Bauer (University of Iowa), Markus van Tol (University of Iowa), Steve Pieper (Isomics)"
] # insert your name in the list
parent.helpText = """
PET Tumor Segmentation Module
"""
parent.acknowledgementText = """
This editor extension was developed by
Christian Bauer, University of Iowa and
Markus van Tol, Univesity of Iowa
based on work by:
Steve Pieper, Isomics, Inc.
based on work by:
Jean-Christophe Fillion-Robin, Kitware Inc.
and was partially funded by NIH grants U01CA140206, U24CA180918 and 3P41RR013218.
"""
# don't show this module - it only appears in the Editor module
parent.hidden = True
# register segmenation effect
import qSlicerSegmentationsEditorEffectsPythonQt as effects
scriptedEffect = effects.qSlicerSegmentEditorScriptedEffect(None)
scriptedEffect.setPythonSource(__file__.replace('\\', '/'))
scriptedEffect.self().register()
def registerEditorEffect(self):
import qSlicerSegmentationsEditorEffectsPythonQt as qSlicerSegmentationsEditorEffects
instance = qSlicerSegmentationsEditorEffects.qSlicerSegmentEditorScriptedEffect(
None)
effectFilename = os.path.join(
os.path.dirname(__file__),
self.__class__.__name__ + 'Lib/SegmentEditorEffect.py')
instance.setPythonSource(effectFilename.replace('\\', '/'))
instance.self().register()
def initializeAfterStartup(self):
# Copy client_api if running from build tree to avoid the need to configure the project with CMake
# (in the install tree, CMake takes care of the copy and this code section is not used).
import shutil
pluginDir = os.path.dirname(__file__)
logging.info('This plugin dir: {}'.format(pluginDir))
if os.path.exists(pluginDir + '/../../py_client/client_api.py'):
logging.info('Running from build tree - update client_api.py')
if os.path.exists(pluginDir + '/client_api.py'):
os.remove(pluginDir + '/NvidiaAIAAClientAPI/client_api.py')
if os.path.exists(pluginDir + '/client_api.pyc'):
os.remove(pluginDir + '/NvidiaAIAAClientAPI/client_api.pyc')
if os.path.exists(
pluginDir +
'/NvidiaAIAAClientAPI/__pycache__/client_api.cpython-36.pyc'
):
os.remove(
pluginDir +
'/NvidiaAIAAClientAPI/__pycache__/client_api.cpython-36.pyc'
)
shutil.copy(pluginDir + '/../../py_client/client_api.py',
pluginDir + '/NvidiaAIAAClientAPI/client_api.py')
# Register segment editor effect
import qSlicerSegmentationsEditorEffectsPythonQt as qSlicerSegmentationsEditorEffects
instance = qSlicerSegmentationsEditorEffects.qSlicerSegmentEditorScriptedEffect(
None)
effectFilename = os.path.join(
os.path.dirname(__file__),
self.__class__.__name__ + 'Lib/SegmentEditorEffect.py')
instance.setPythonSource(effectFilename.replace('\\', '/'))
instance.self().register()
# Register settings panel
if not slicer.app.commandOptions().noMainWindow:
self.settingsPanel = SegmentEditorNvidiaAIAASettingsPanel()
slicer.app.settingsDialog().addPanel("NVidia", self.settingsPanel)
def clone(self):
# It should not be necessary to modify this method
import qSlicerSegmentationsEditorEffectsPythonQt as effects
clonedEffect = effects.qSlicerSegmentEditorScriptedEffect(None)
clonedEffect.setPythonSource(__file__.replace('\\', '/'))
return clonedEffect
def registerEditorEffect(self):
import qSlicerSegmentationsEditorEffectsPythonQt as qSlicerSegmentationsEditorEffects
instance = qSlicerSegmentationsEditorEffects.qSlicerSegmentEditorScriptedEffect(None)
effectFilename = os.path.join(os.path.dirname(__file__), self.__class__.__name__+'Lib/SegmentEditorEffect.py')
instance.setPythonSource(effectFilename.replace('\\','/'))
instance.self().register()
def clone(self):
import qSlicerSegmentationsEditorEffectsPythonQt as effects
clonedEffect = effects.qSlicerSegmentEditorScriptedEffect(None)
clonedEffect.setPythonSource(__file__.replace('\\','/'))
return clonedEffect
def registerEditorEffect(self):
import qSlicerSegmentationsEditorEffectsPythonQt as effects
scriptedEffect = effects.qSlicerSegmentEditorScriptedEffect(None)
scriptedEffect.setPythonSource(__file__.replace('\\', '/'))
scriptedEffect.self().register()
def clone(self):
# It should not be necessary to modify this method
import qSlicerSegmentationsEditorEffectsPythonQt as effects
clonedEffect = effects.qSlicerSegmentEditorScriptedEffect(None)
clonedEffect.setPythonSource(__file__.replace('\\','/'))
return clonedEffect
def clone(self): import qSlicerSegmentationsEditorEffectsPythonQt as effects clonedEffect = effects.qSlicerSegmentEditorScriptedEffect(None) clonedEffect.setPythonSource(SegmentEditorGrowCutEffect.filePath) return clonedEffect
