def __init__(self,
path_to_db: Optional[str] = None,
exp_id: Optional[int] = None,
name: Optional[str] = None,
sample_name: Optional[str] = None,
format_string: str = "{}-{}-{}",
conn: Optional[ConnectionPlus] = None) -> None:
"""
Create or load an experiment. If exp_id is None, a new experiment is
created. If exp_id is not None, an experiment is loaded.
Args:
path_to_db: The path of the database file to create in/load from.
If a conn is passed together with path_to_db, an exception is
raised
exp_id: The id of the experiment to load
name: The name of the experiment to create. Ignored if exp_id is
not None
sample_name: The sample name for this experiment. Ignored if exp_id
is not None
format_string: The format string used to name result-tables.
Ignored if exp_id is not None.
conn: connection to the database. If not supplied, the constructor
first tries to use path_to_db to figure out where to connect to.
If path_to_db is not supplied either, a new connection
to the DB file specified in the config is made
"""
if path_to_db is not None and conn is not None:
raise ValueError('Received BOTH conn and path_to_db. Please '
'provide only one or the other.')
self._path_to_db = path_to_db or get_DB_location()
self.conn = conn or connect(self.path_to_db, get_DB_debug())
max_id = len(get_experiments(self.conn))
if exp_id is not None:
if exp_id not in range(1, max_id + 1):
raise ValueError('No such experiment in the database')
self._exp_id = exp_id
else:
# it is better to catch an invalid format string earlier than later
try:
# the sqlite_base will try to format
# (name, exp_id, run_counter)
format_string.format("name", 1, 1)
except Exception as e:
raise ValueError("Invalid format string. Can not format "
"(name, exp_id, run_counter)") from e
log.info("creating new experiment in {}".format(self.path_to_db))
name = name or f"experiment_{max_id+1}"
sample_name = sample_name or "some_sample"
self._exp_id = ne(self.conn, name, sample_name, format_string)
def experiments() -> List[Experiment]:
"""
List all the experiments in the container (database file from config)
Returns:
All the experiments in the container
"""
log.info("loading experiments from {}".format(get_DB_location()))
rows = get_experiments(connect(get_DB_location(), get_DB_debug()))
experiments = []
for row in rows:
experiments.append(load_experiment(row['exp_id']))
return experiments
def __init__(self, path_to_db: Optional[str]=None,
exp_id: Optional[int]=None,
name: Optional[str]=None,
sample_name: Optional[str]=None,
format_string: Optional[str]="{}-{}-{}") -> None:
"""
Create or load an experiment. If exp_id is None, a new experiment is
created. If exp_id is not None, an experiment is loaded.
Args:
path_to_db: The path of the database file to create in/load from
exp_id: The id of the experiment to load
name: The name of the experiment to create. Ignored if exp_id is
not None
sample_name: The sample name for this experiment. Ignored if exp_id
is not None
format_string: The format string used to name result-tables.
Ignored if exp_id is not None.
"""
self.path_to_db = path_to_db or get_DB_location()
self.conn = connect(self.path_to_db, get_DB_debug())
max_id = len(get_experiments(self.conn))
if exp_id:
if exp_id not in range(1, max_id+1):
raise ValueError('No such experiment in the database')
self._exp_id = exp_id
else:
# it is better to catch an invalid format string earlier than later
try:
# the sqlite_base will try to format
# (name, exp_id, run_counter)
format_string.format("name", 1, 1)
except Exception as e:
raise ValueError("Invalid format string. Can not format "
"(name, exp_id, run_counter)") from e
log.info("creating new experiment in {}".format(self.path_to_db))
name = name or f"experiment_{max_id+1}"
sample_name = sample_name or "some_sample"
self._exp_id = ne(self.conn, name, sample_name, format_string)
self.format_string = format_string
def __init__(self, path_to_db: str) -> None:
self.path_to_db = path_to_db
self.conn = connect(self.path_to_db, get_DB_debug())
self._debug = False