Python convert_Ti_to_FLX Exemples

Exemple #1

 def test_convert_Ti_to_FLX(self):
     """test_convert_Ti_to_FLX should do proper conversion from Ti to FLX"""
     sff_flx_fp = os.path.join(self.sff_dir, 'test_FLX.sff')
     sff_flx_gz_fp = os.path.join(self.gz_sff_dir, 'test_FLX_gz.sff')
     convert_Ti_to_FLX(self.sff_fp, sff_flx_fp)
     convert_Ti_to_FLX(self.sff_gz_fp, sff_flx_gz_fp)
     self.assertNotEqual(os.path.getsize(sff_flx_fp), 0)
     self.assertNotEqual(os.path.getsize(sff_flx_gz_fp), 0)

Exemple #2

Fichier : test_process_sff.py Projet : TheSchwa/qiime

 def test_convert_Ti_to_FLX(self):
     """test_convert_Ti_to_FLX should do proper conversion from Ti to FLX"""
     sff_flx_fp = os.path.join(self.sff_dir, 'test_FLX.sff')
     sff_flx_gz_fp = os.path.join(self.gz_sff_dir, 'test_FLX_gz.sff')
     convert_Ti_to_FLX(self.sff_fp, sff_flx_fp)
     convert_Ti_to_FLX(self.sff_gz_fp, sff_flx_gz_fp)
     self.assertNotEqual(os.path.getsize(sff_flx_fp), 0)
     self.assertNotEqual(os.path.getsize(sff_flx_gz_fp), 0)

Exemple #3

Fichier : test_process_sff.py Projet : Ecogenomics/FrankenQIIME

 def test_convert_Ti_to_FLX(self):
     """test_make_flow_txt should make flowgram file as expected"""
     sff_flx_fp = os.path.join(self.sff_dir, 'test_FLX.sff')
     convert_Ti_to_FLX(self.sff_fp, sff_flx_fp)
     self.assertNotEqual(os.path.getsize(sff_flx_fp), 0)