def test_check_tree_subset(self):
""" Checks that fasta labels are a subset of tree tips properly """
fasta_labels = ['seq1_1', 'seq1_2', 'seq2_3', 'seq3_4']
actual_subset_results = check_tree_subset(fasta_labels,
self.sample_tree_3tips_fp)
# Should find all and give True result
self.assertEqual(actual_subset_results, True)
# Should also get same results with 5 tip tree
fasta_labels = ['seq1_1', 'seq1_2', 'seq2_3', 'seq3_4']
actual_subset_results = check_tree_subset(fasta_labels,
self.sample_tree_5tips_fp)
# Should find all and give True result
self.assertEqual(actual_subset_results, True)
# Change two of the fasta labels to not match tree tips
fasta_labels = ['seq1_1', 'seqX_2', 'seq2_3', 'seqY_4']
actual_subset_results = check_tree_subset(fasta_labels,
self.sample_tree_5tips_fp)
# Should find seqX and seqY as not being a subset
self.assertEqual(actual_subset_results, ['seqX', 'seqY'])
def test_check_tree_subset(self):
""" Checks that fasta labels are a subset of tree tips properly """
fasta_labels = ['seq1_1', 'seq1_2', 'seq2_3', 'seq3_4']
actual_subset_results = check_tree_subset(fasta_labels,
self.sample_tree_3tips_fp)
# Should find all and give True result
self.assertEqual(actual_subset_results, True)
# Should also get same results with 5 tip tree
fasta_labels = ['seq1_1', 'seq1_2', 'seq2_3', 'seq3_4']
actual_subset_results = check_tree_subset(fasta_labels,
self.sample_tree_5tips_fp)
# Should find all and give True result
self.assertEqual(actual_subset_results, True)
# Change two of the fasta labels to not match tree tips
fasta_labels = ['seq1_1', 'seqX_2', 'seq2_3', 'seqY_4']
actual_subset_results = check_tree_subset(fasta_labels,
self.sample_tree_5tips_fp)
# Should find seqX and seqY as not being a subset
self.assertEqual(actual_subset_results, ['seqX', 'seqY'])