def setUp(self):
super().setUp()
demuxed = CasavaOneEightSingleLanePerSampleDirFmt(
self.get_data_path('subsample_paired_end'), mode='r')
self.demux_data = transform(
demuxed, to_type=SingleLanePerSamplePairedEndFastqDirFmt)
def _to_newick(tree: skbio.TreeNode):
return transform(tree, from_type=skbio.TreeNode, to_type=NewickFormat)