def test_exists_notindb(self):
self.assertFalse(User.exists("*****@*****.**"))
def test_exists_invalid_email(self):
with self.assertRaises(IncorrectEmailError):
User.exists("notanemail.@badformat")
def test_exists(self):
self.assertTrue(User.exists("*****@*****.**"))
def post(self):
try:
payload = json_decode(self.request.body)
except ValueError:
self.fail('Could not parse body', 400)
return
required = {
'title', 'study_abstract', 'study_description', 'study_alias',
'owner', 'contacts'
}
if not required.issubset(payload):
self.fail('Not all required arguments provided', 400)
return
title = payload['title']
study_abstract = payload['study_abstract']
study_desc = payload['study_description']
study_alias = payload['study_alias']
notes = payload['notes']
owner = payload['owner']
if not User.exists(owner):
self.fail('Unknown user', 403)
return
else:
owner = User(owner)
contacts = payload['contacts']
if Study.exists(title):
self.fail('Study title already exists', 409)
return
pi_name = contacts['principal_investigator'][0]
pi_aff = contacts['principal_investigator'][1]
if not StudyPerson.exists(pi_name, pi_aff):
self.fail('Unknown principal investigator', 403)
return
else:
pi = StudyPerson.from_name_and_affiliation(pi_name, pi_aff)
lp_name = contacts['lab_person'][0]
lp_aff = contacts['lab_person'][1]
if not StudyPerson.exists(lp_name, lp_aff):
self.fail('Unknown lab person', 403)
return
else:
lp = StudyPerson.from_name_and_affiliation(lp_name, lp_aff)
info = {
'lab_person_id': lp,
'principal_investigator_id': pi,
'study_abstract': study_abstract,
'study_description': study_desc,
'study_alias': study_alias,
'notes': notes,
# TODO: we believe it is accurate that mixs is false and
# metadata completion is false as these cannot be known
# at study creation here no matter what.
# we do not know what should be done with the timeseries.
'mixs_compliant': False,
'metadata_complete': False,
'timeseries_type_id': 1
}
study = Study.create(owner, title, info)
self.set_status(201)
self.write({'id': study.id})
self.finish()
def test_exists_invaid_email(self):
with self.assertRaises(IncorrectEmailError):
User.exists("notanemail@badformat")
def test_exists_notindb(self):
self.assertFalse(User.exists("*****@*****.**"))
def test_exists(self):
self.assertTrue(User.exists("*****@*****.**"))