def setModules(self, modules):
self.ui.moduleList.clear()
self._moduleItems = {}
for module in modules:
item = qt.QListWidgetItem(module.key)
item.setFlags(item.flags() | qt.Qt.ItemIsUserCheckable)
item.setCheckState(qt.Qt.Checked)
self.ui.moduleList.addItem(item)
self._moduleItems[item] = module
if len(modules) > 1:
self.ui.label.text = (
"The following modules can be loaded. "
"Would you like to load them now?")
elif len(modules) == 1:
self.ui.label.text = (
"The following module can be loaded. "
"Would you like to load it now?")
else:
raise ValueError("At least one module must be provided")
self.validate()
def _onAddMeasurementButtonClicked(self):
# TODO: findings assessment
# TODO: add segmentation and enable editor
listWidgetItem = qt.QListWidgetItem(self._measurementsListWidget)
self._measurementsListWidget.addItem(listWidgetItem)
findingsItemWidget = ProstateMeasurementItemWidget()
listWidgetItem.setSizeHint(findingsItemWidget.sizeHint)
self._findingsListWidget.setItemWidget(listWidgetItem, findingsItemWidget)
self._findingsListWidget.selectionModel().clear()
model = self._findingsListWidget.model()
self._findingsListWidget.selectionModel().setCurrentIndex(model.index(model.rowCount()-1, 0),
qt.QItemSelectionModel.Select)
self.updateButtons()
def _fillAnnotationTable(self):
self._annotationListWidget.clear()
for volume in self._volumeNodes:
volumeSeriesTypes = VolumeSeriesTypeSceneObserver(
).volumeSeriesTypes
if volume in volumeSeriesTypes:
seriesType = volumeSeriesTypes[volume]
listWidgetItem = qt.QListWidgetItem(self._annotationListWidget)
self._annotationListWidget.addItem(listWidgetItem)
annotationItemWidget = AnnotationItemWidget(
self._finding, seriesType)
listWidgetItem.setSizeHint(annotationItemWidget.sizeHint)
self._annotationListWidget.setItemWidget(
listWidgetItem, annotationItemWidget)
else:
logging.info(
"Could not find matching series type for volume %s" %
volume.GetName())
def calculateTargetsDistance(self):
self.targetDistanceWidget.clear()
if self.targetTablePlugin.currentTargets is not None:
numberOfTargets = self.targetTablePlugin.currentTargets.GetNumberOfFiducials(
)
for targetIndex_A in range(numberOfTargets):
for targetIndex_B in range(targetIndex_A + 1, numberOfTargets):
tAName = self.targetTablePlugin.currentTargets.GetNthFiducialLabel(
targetIndex_A)
tBName = self.targetTablePlugin.currentTargets.GetNthFiducialLabel(
targetIndex_B)
posA = 3 * [0.0]
posB = 3 * [0.0]
self.targetTablePlugin.currentTargets.GetNthFiducialPosition(
targetIndex_A, posA)
self.targetTablePlugin.currentTargets.GetNthFiducialPosition(
targetIndex_B, posB)
dist = numpy.linalg.norm(
numpy.array(posA) - numpy.array(posB)) / 10.0
itemString = str(tAName) + " -> " + str(
tBName) + ": " + '%3.1f' % dist + " cm"
tmpWidgetItem = qt.QListWidgetItem(itemString)
self.targetDistanceWidget.addItem(tmpWidgetItem)
pass
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
self.logic = SegmentationExtractionModuleLogic()
# ------ 1. CREACION LAYOUT Y BOTONES ------
self.layoutManager = slicer.app.layoutManager()
self.layoutManager.setLayout(0)
#
# CARGAR IMAGEN
#
# Creacion layout
collapsibleButtonLoad = ctk.ctkCollapsibleButton()
collapsibleButtonLoad.text = "Load Files"
self.layout.addWidget(collapsibleButtonLoad)
formLayout_load = qt.QFormLayout(collapsibleButtonLoad)
# Definir botones para cargar DICOM y crop volume
# DICOM
self.inputDICOM_label = qt.QLabel('DICOM Location: ')
self.loadDICOM_button = qt.QPushButton('Search DICOM')
self.loadDICOM_button.accessibleDescription = 'DICOM'
self.loadDICOM_button.toolTip = "Search DICOM"
self.loadDICOM_button.enabled = True
formLayout_load.addRow(self.inputDICOM_label, self.loadDICOM_button)
# Crop Volume
self.inputCropVolume_label = qt.QLabel('Crop Volume location: ')
self.loadCropVolume_button = qt.QPushButton('Search Crop Volume ')
self.loadCropVolume_button.accessibleDescription = 'Volume'
self.loadCropVolume_button.toolTip = "Search Crop Volume"
formLayout_load.addRow(self.inputCropVolume_label,
self.loadCropVolume_button)
# # Cuadro de texto para introducir el directorio de la imagen a cargar
# self.inputImage_label = qt.QLabel('Imagen original: ')
# self.inputImage_textInput = qt.QLineEdit()
# self.inputImage_textInput.text = 'C:/Slicer/Pyramid/Pyramid/Data/inputImage.png'
# formLayout_load.addRow(self.inputImage_label, self.inputImage_textInput) # incluimos el cuadro de texto al layout
# Boton para cargar imagen
self.loadImagesButton = qt.QPushButton("Load Files")
self.loadImagesButton.toolTip = "Load files"
self.loadImagesButton.enabled = True
formLayout_load.addRow(
self.loadImagesButton) # incluimos el boton al layout
# SEGMENTATIONS TO EXPORT
collapsibleButtonSegmentation = ctk.ctkCollapsibleButton()
collapsibleButtonSegmentation.text = "Segmentations to Export"
self.layout.addWidget(collapsibleButtonSegmentation)
formLayout_segmentation = qt.QFormLayout(
collapsibleButtonSegmentation) # Layout dentro de la seccion
#
# create table
#
# Original Contour Names table
# self.segmentationsTable = qt.QTableWidget(5, 1)
# self.segmentationsTable.setHorizontalHeaderLabels([" "])
# self.segmentationsTable.setVerticalHeaderLabels(" ")
# newItem = qt.QTableWidgetItem(3)
# self.segmentationsTable.setItem(1,1, newItem)
# formLayout_segmentation.addRow(self.segmentationsTable)
# call function to get names of contours
# define lists
self.contour_names = ['Ojo', 'medula', 'tronco', 'paciente']
self.original_contour_list = qt.QListWidget()
# Initiate empty list of exported contours at first (None selected)
self.exported_contours_list = qt.QListWidget()
# Initiate empty list of exported contours at first (None selected)
for contour in self.contour_names:
contour_item = qt.QListWidgetItem(contour)
self.original_contour_list.addItem(contour_item)
# define button layout
vertical_layout_buttons = qt.QVBoxLayout()
# define forwards button
self.move_segments_forwards_button = qt.QPushButton(">")
self.move_segments_forwards_button.toolTip = "Copy segmentations"
self.move_segments_forwards_button.enabled = True
vertical_layout_buttons.addWidget(self.move_segments_forwards_button)
vertical_layout_buttons.addStretch()
#define backwards button. Set enable = False at the beginning
self.move_segments_backwards_button = qt.QPushButton("<")
self.move_segments_backwards_button.toolTip = "Eliminate segmentation from exported list"
self.move_segments_backwards_button.enabled = True
vertical_layout_buttons.addWidget(self.move_segments_backwards_button)
vertical_layout_buttons.addStretch()
# export button
self.export_button = qt.QPushButton('Export Labelmaps')
self.export_button.enabled = True
#define titles
# title_right = qt.QLabel('Original segmentation')
# title_right.setAlignment(qt.Qt.AlignRight)
# title_left = qt.QLabel('Segmentations to export')
# title_left.setAlignment(qt.Qt.AlignLeft)
# set layout
horizontal_layout = qt.QHBoxLayout()
horizontal_layout.addWidget(self.original_contour_list)
horizontal_layout.addLayout(vertical_layout_buttons)
horizontal_layout.addWidget(self.exported_contours_list)
#formLayout_segmentation.addRow(title_right, title_left)
formLayout_segmentation.addRow(horizontal_layout)
formLayout_segmentation.addRow(self.export_button)
#
# GUARDAR IMAGEN
#
# Creacion Layout
collapsibleButtonSave = ctk.ctkCollapsibleButton()
collapsibleButtonSave.text = "Save Labelmaps"
self.layout.addWidget(collapsibleButtonSave)
formLayout_save = qt.QFormLayout(
collapsibleButtonSave) # Layout dentro de la seccion
# Cuadro de texto para indicar el directorio de la imagen de salida (procesada)
self.outputImage_label = qt.QLabel('Select folder to save: ')
self.folder_to_save = qt.QPushButton(
'Explore') #'C:/Slicer/Pyramid/Pyramid/Data/outputImage.png'
formLayout_save.addRow(
self.outputImage_label,
self.folder_to_save) # incluimos el cuadro de texto al layout
# Boton para guardar imagen
self.saveImageButton = qt.QPushButton("Save labelmaps")
self.saveImageButton.toolTip = "Save labelmaps"
self.saveImageButton.enabled = True
formLayout_save.addRow(
self.saveImageButton) # incluimos el boton al layout
# Incluimos un espacio en vertical
self.layout.addStretch(1)
# ------ 2. CONEXION BOTONES CON FUNCIONES ------
# Conectar cada boton a una funcion
self.loadDICOM_button.connect('clicked(bool)',
self.config_dialog_dicom)
self.loadCropVolume_button.connect('clicked(bool)',
self.config_dialog_cropped_volume)
self.loadImagesButton.connect('clicked(bool)', self.onLoadImageButton)
self.move_segments_forwards_button.connect('clicked(bool)',
self.move_segments_forwards)
self.move_segments_backwards_button.connect(
'clicked(bool)', self.move_segments_backwards)