def populate_free_pin(self):
self.queue_model_hwobj.clear_model("free-pin")
self.queue_model_hwobj.select_model("free-pin")
sample = queue_model_objects.Sample()
sample.free_pin_mode = True
sample.set_name("manually-mounted")
self.queue_model_hwobj.add_child(
self.queue_model_hwobj.get_model_root(), sample)
def samples_from_sc_content(self, sc_basket_content, sc_sample_content):
basket_list = []
sample_list = []
for basket_info in sc_basket_content:
basket = queue_model_objects.Basket()
basket.init_from_sc_basket(basket_info, "Puck")
basket_list.append(basket)
for sample_info in sc_sample_content:
sample = queue_model_objects.Sample()
sample.init_from_sc_sample(sample_info)
sample_list.append(sample)
return basket_list, sample_list
def samples_from_lims(self, lims_sample_list):
barcode_samples = {}
location_samples = {}
for lims_sample in lims_sample_list:
sample = queue_model_objects.Sample()
sample.init_from_lims_object(lims_sample)
if sample.lims_code:
barcode_samples[sample.lims_code] = sample
if sample.lims_location:
location_samples[sample.lims_location] = sample
return (barcode_samples, location_samples)
def samples_from_plate_content(self, plate_sample_content):
row_list = []
sample_list = []
actual_row_index = -1
for sample_info in plate_sample_content:
if actual_row_index < sample_info[1]:
row = queue_model_objects.Basket()
row_info = [sample_info[1], None]
row.init_from_sc_basket(row_info, "Row")
row_list.append(row)
actual_row_index = sample_info[1]
sample = queue_model_objects.Sample()
sample.init_from_plate_sample(sample_info)
sample_list.append(sample)
return row_list, sample_list
def __init__(self, *args):
BaseComponents.BlissWidget.__init__(self, *args)
#
# Data attributes
#
self.sample = queue_model_objects.Sample()
self.crystal = self.sample.crystals[0]
self.sample_mib = DataModelInputBinder(self.sample)
self.crystal_mib = DataModelInputBinder(self.crystal)
#
# Qt - Signals/Slots
#
self.defineSlot("populate_sample_details", ({}))
#
# Layout
#
main_layout = qt.QHBoxLayout(self, 11, 15, "main_layout")
self.crystal_widget = CrystalWidgetLayout(self)
self.sample_info_widget = SampleInfoWidgetLayout(self)
main_layout.addWidget(self.sample_info_widget)
main_layout.addWidget(self.crystal_widget)
main_layout.addStretch(10)
self.crystal_mib.bind_value_update(
"space_group", self.crystal_widget.space_group_value_label, str,
None)
self.crystal_mib.bind_value_update(
"protein_acronym",
self.crystal_widget.protein_acronym_value_label,
str,
None,
)
self.crystal_mib.bind_value_update("cell_a",
self.crystal_widget.a_value_label,
str, None)
self.crystal_mib.bind_value_update(
"cell_alpha", self.crystal_widget.alpha_value_label, str, None)
self.crystal_mib.bind_value_update("cell_b",
self.crystal_widget.b_value_label,
str, None)
self.crystal_mib.bind_value_update(
"cell_beta", self.crystal_widget.beta_value_label, str, None)
self.crystal_mib.bind_value_update("cell_c",
self.crystal_widget.c_value_label,
str, None)
self.crystal_mib.bind_value_update(
"cell_gamma", self.crystal_widget.gamma_value_label, str, None)
self.sample_mib.bind_value_update(
"name", self.sample_info_widget.name_value_label, str, None)
self.sample_mib.bind_value_update(
"code", self.sample_info_widget.data_matrix_value_label, str, None)
self.sample_mib.bind_value_update(
"holder_length",
self.sample_info_widget.holder_length_value_label,
str,
None,
)
self.sample_mib.bind_value_update(
"lims_sample_location",
self.sample_info_widget.sample_location_value_label,
str,
None,
)
self.sample_mib.bind_value_update(
"lims_container_location",
self.sample_info_widget.basket_location_value_label,
str,
None,
)