def testFetchIds(self):
"""Test individual entry fetch"""
idList = None
try:
fobj = UniProtUtils(saveText=True)
for tId in self.__unpIdList3:
idList = [tId]
retD, matchD = fobj.fetchList(idList,
usePrimary=self.__usePrimary,
retryAltApi=self.__retryAltApi)
numPrimary, numSecondary, numNone = self.__matchSummary(matchD)
logger.debug("%d %d %d", numPrimary, numSecondary, numNone)
#
rematchD = fobj.rebuildMatchResultIndex(idList, retD)
self.assertDictEqual(matchD, rematchD)
#
self.assertGreaterEqual(len(retD), len(idList))
if retD and self.__export:
fobj.writeUnpXml(
os.path.join(self.__workPath, tId + ".xml"))
self.__mU.doExport(os.path.join(self.__workPath,
tId + ".json"),
retD,
fmt="json",
indent=3)
except Exception as e:
logger.exception("Failing with idList %r %s", idList, str(e))
self.fail()
def __rebuildReferenceMatchIndex(self, idList, referenceD):
fobj = UniProtUtils()
logger.info("Rebuilding match index on idList (%d) using reference data (%d) %r", len(idList), len(referenceD), type(referenceD))
matchD = fobj.rebuildMatchResultIndex(idList, referenceD)
return matchD