if '&' in args:
backgroundTask = False
args.remove('&')
if rc < 0: # Requirement 3: Command fails
os.write(2, ("Program terminated with exit code" + rc + "\n").encode())
sys.exit(1)
elif rc == 0: # Child process
# Check for Redirection
if (redirect.hasRedirect(args)):
if (redirect.isValid(args)): # Check syntax of command
if (redirect.hasOutput(args)):
outputIndex = redirect.output(args) # Get Output Index
os.close(1) # Close stdout
os.open(args[outputIndex],
os.O_CREAT | os.O_WRONLY) # Open Output
os.set_inheritable(1, True)
args.remove('>') # Remove redirection from command
args.remove(args[outputIndex]) # ^
if (redirect.hasInput(args)):
inputIndex = redirect.input(args) # Get Input Index
os.close(0) # Close stdin
os.open(args[inputIndex], os.O_RDONLY)
# Open Input
os.set_inheritable(0, True)
args.remove('<') # Remove redirection from command
args.remove(args[inputIndex]) # ^
def setUp(self):
self.r = redirect.output("modflowcomponent_test.log")
self.r.toFile()
#
# Definition of the mesh
#
self.mesh = CartesianMesh2D("global", "XY")
self.nx = 42
self.ny = 1
self.nb_of_intervals = [self.nx, self.ny]
self.dx = [0.002]
self.dx = self.dx * self.nx
self.dx[0] = self.dx[0] * 0.5
self.pointlist_x = [0.0]
self.pointlist_y = [0.0]
for i in range(1, len(self.dx), 1):
self.pointlist_x.append(self.pointlist_x[i - 1] + self.dx[i - 1])
self.pointlist_y = [0.0]
self.pointlist_y.append(1.0)
self.mesh.setAxis("X", self.pointlist_x)
self.mesh.setAxis("Y", self.pointlist_y)
#
# End of Definitions for the mesh
#
# print " Study name:",self.study._name
#
# Definitions of materials
#
print "-" * 20
print " Definition of materials :"
print "-" * 20
self.clay_material = Material(name="clay",
permeability=Permeability(1.0, "m/s"))
self.cement_material = Material(name="Cement",
permeability=Permeability(
2.0e-7, "m/s"))
#
print "-" * 20
print " Definition of meshes :"
print "-" * 20
self.clay_reg_m = CartesianMesh2D("Clay Region", "XY")
self.clay_reg_m.setZone("Clay Region",
index_min=Index2D(2, 1),
index_max=Index2D(self.nx - 1, 1))
#
print "-" * 20
print " Definition of meshes :"
print "-" * 20
self.east_bo_m = CartesianMesh2D("boundary east", "XY")
self.east_bo_m.setZone("boundary east",
index_min=Index2D(1, 1),
index_max=Index2D(1, 1))
#
# Definition of regions
#
print "-" * 25
print " Definition of regions :"
print "-" * 25
self.regions_list = []
print type(self.clay_reg_m
), " nom de la classe :", self.clay_reg_m.__class__.__name__
print type(
self.clay_material
), " nom de la classe :", self.clay_material.__class__.__name__
print "-" * 20
self.reg1 = Region(self.clay_reg_m, self.clay_material)
self.regions_list.append(self.reg1)
#print " ---- type ----", hasattr(reg1,"material")
#print " ---- type ----", hasattr(reg1,"support")
#temp = reg1.__class__
#name = temp.__name__
#print " nom ",name
#pos = name.find('_objref_')
#print " pos ",pos
tclasses = [Region]
#for c in tclasses:
# if isinstance(reg1,c):
# print " ok ",c
#
# Definition of boundary conditions
#
print "-" * 20
print " Definition of boundary conditions :"
print "-" * 20
self.boundaryconditions_list = []
print "-" * 10
print " east_bo_m :"
print "-" * 10
self.east_bo_m = CartesianMesh2D("boundary east", "XY")
self.east_min = Index2D(1, 1)
self.east_max = Index2D(1, 1)
#east_bo_m.setZone("boundary east",index_min = Index2D(1,1),index_max = Index2D(1,1))
#east_bo_m.setZone("boundary east",index_min = Index2D(1,1),index_max = Index2D(1,1))
self.east_bo_m.setZone("boundary east", self.east_min, self.east_max)
self.Boundary = self.east_bo_m
self.head_value = Head(2.2e-7, "m")
print " class name ", self.head_value.__class__.__name__
self.bc_east = BoundaryCondition(self.Boundary, 'Dirichlet',
self.head_value)
print " on verifie la classe "
if not isinstance(self.bc_east, BoundaryCondition):
raise Exception, " the instanciation of the boundary class must be verified "
print " on a verifie la classe "
print " east_bo_m : append"
self.boundaryconditions_list.append(self.bc_east)
#
print "-" * 10
print " west_bo_w :"
print "-" * 10
self.west_bo_m = CartesianMesh2D("boundary west", "XY")
self.west_bo_m.setZone("boundary west",
index_min=Index2D(41, 1),
index_max=Index2D(41, 1))
self.Boundary = self.west_bo_m
self.Value = Head(0.0, "m")
self.bc_west = BoundaryCondition(self.Boundary, 'Dirichlet',
self.Value)
print " east_bo_m : append"
self.boundaryconditions_list.append(self.bc_west)
#
# Definition of initial conditions
#
self.initialconditions_list = []
self.reg1_ic = InitialCondition(self.clay_reg_m,
value=Head(1.e-8, "m"))
self.initialconditions_list.append(self.reg1_ic)
# ----------------
# Darcy Resolution
# ----------------
self.title = " One dimensional simulation"
print "Title of the study : ", self.title
#
# Definition of Modflow specific parameters
#
self.mxiter = 200
self.accl = 1.0
self.hclose = 1.e-15
print " Study definition "
self.Study_type = 'Saturated'
print " SaturatedHydroModflow instance "
# self.darcy = SaturatedHydroModflow(self.study._name,self.regions_list,
# self.boundaryconditions_list,self.initialconditions_list)
self.darcy = SaturatedHydroModflow("Modflow_1/2D", self.regions_list,
self.boundaryconditions_list,
self.initialconditions_list)
print " SaturatedHydroModflow setMesh method "
self.darcy.setMesh(self.mesh)
print " SaturatedHydroModflow setData method "
self.darcy.setData()
self.darcy.run()
self.filename_sip = "Monod.sip"
self.modflow_sip = setSolverParameter(self.mxiter, self.accl,
self.hclose)
self.modflow_sip.sauvegarde(self.filename_sip)
def main():
"""
parse command line options
Three options are available :
- F for flow
- CT for chemical transport
- C for chemistry
for example, just type "python validationTest.py ct"
for an interactive output type "python validationTest.py i"
"""
startingDate = gmtime()
initialCpuTime = clock()
initialTime = time()
result = 0
ind = 0
option = "WTCT"
#print " sys ",sys.argv[1:],sys.argv[1:][0],type(sys.argv[1:])
if sys.argv[1:] != []:
if sys.argv[1:][0].lower() in ["f","ct","c","wtf","w"]:
if sys.argv[1:][0].lower() in ["f","wtf"]:
option = "WTF"
elif sys.argv[1:][0].lower() == "ct":
option = "WT"+sys.argv[1:][0].upper()
if sys.argv[1:][0].lower() == "c":
option = "WT"+sys.argv[1:][0].upper()
if sys.argv[1:][0].lower() == "w":
option = "WT"+sys.argv[1:][0].upper()
print option
stringc = environ[option]
print " stringc ",stringc
else:
stringc = "all"
print " now ",len(listOfTests)
if len(sys.argv[1:]) == 1 and sys.argv[1:][0].lower() == "i":
pass
else:
redic = redirect.output("validation.log")
redic.toFile()
pass
path = ""
#
# ind controls the test case list length
# while indc is the number of successfully run test cases
#
indc = 0
while result == 0 and ind+1 <= len(listOfTests):
if stringc == "all":
path = chdir(listOfTests[ind][0])
string = "python "+listOfTests[ind][1]
print " ~~~~~~~~~~~ "
print " case run id ",ind," name: ",listOfTests[ind][1]," in the directory: ",listOfTests[ind][0]
print " ~~~~~~~~~~~ "
sys.stdout.flush()
result = system(string)
indc+=1
elif stringc in listOfTests[ind][0]:
path = chdir(listOfTests[ind][0])
string = "python "+listOfTests[ind][1]
print " ~~~~~~~~~~~ "
print " case run id ",ind," name: ",listOfTests[ind][1]," in the directory: ",listOfTests[ind][0]
print " ~~~~~~~~~~~ "
sys.stdout.flush()
result = system(string)
indc+=1
else:
pass
sleep(0.5)
if stringc in ["all", listOfTests[ind][0]]:
print " reg",ind,stringc, path
ind+=1
pass
# path = chdir(path"/Cec_column","guitest1.py")
# subprocess( -> mpdboot)
# mpirun -np 2 mpipython guitest_mpi.py
# subprocess( -> mpdballexit)
if result != 0:
raise Exception, " problem with the test case %s in the directory: %s"%(listOfTests[ind-1][1],listOfTests[ind-1][0])
else:
print " test cases run fine",indc
print " the elapsed time in seconds is",time()-initialTime
print " the starting date is ",startingDate
print " the date is ",gmtime()
def main():
"""
parse command line options
Three options are available :
- F for flow
- CT for chemical transport
- C for chemistry
for example, just type "python validationTest.py ct"
""" #
redic = redirect.output("validation.log")
redic.toFile()
result = 0
ind = 0
# print " sys ",sys.argv[1:],sys.argv[1:][0],type(sys.argv[1:])
if sys.argv[1:] != []:
if sys.argv[1:][0].lower() in ["f", "ct", "c", "wtf"]:
if sys.argv[1:][0].lower() in ["f", "wtf"]:
option = "WTF"
elif sys.argv[1:][0].lower() == "ct":
option = "WT" + sys.argv[1:][0].upper()
if sys.argv[1:][0].lower() == "c":
option = "WT" + sys.argv[1:][0].upper()
print option
stringc = environ[option]
print " stringc ", stringc
else:
stringc = "all"
print " now ", len(a)
path = ""
#
# ind controls the test case list length
# while indc is the number of successfully run test cases
#
indc = 0
while result == 0 and ind + 1 <= len(a):
if stringc == "all":
path = chdir(a[ind][0])
string = "python " + a[ind][1]
print " ~~~~~~~~~~~ "
print " case run id ", ind, " name: ", a[ind][1], " in the directory: ", a[ind][0]
print " ~~~~~~~~~~~ "
sys.stdout.flush()
result = system(string)
indc += 1
elif stringc in a[ind][0]:
path = chdir(a[ind][0])
string = "python " + a[ind][1]
print " ~~~~~~~~~~~ "
print " case run id ", ind, " name: ", a[ind][1], " in the directory: ", a[ind][0]
print " ~~~~~~~~~~~ "
sys.stdout.flush()
result = system(string)
indc += 1
else:
pass
sleep(0.5)
print " reg", ind, stringc, path
ind += 1
pass
# path = chdir(path"/Cec_column","guitest1.py")
# subprocess( -> mpdboot)
# mpirun -np 2 mpipython guitest_mpi.py
# subprocess( -> mpdballexit)
if result != 0:
raise Exception, " problem with the test case %s in the directory: %s" % (a[ind - 1][1], a[ind - 1][0])
else:
print " test cases run fine", indc
def setUp(self):
self.r = redirect.output("modflowcomponent_test.log")
self.r.toFile()
#
# Definition of the mesh
#
self.mesh = CartesianMesh2D("global","XY")
self.nx = 42
self.ny = 1
self.nb_of_intervals = [self.nx,self.ny]
self.dx = [0.002]
self.dx = self.dx*self.nx
self.dx[0] = self.dx[0]*0.5
self.pointlist_x = [0.0]
self.pointlist_y = [0.0]
for i in range(1,len(self.dx),1):
self.pointlist_x.append(self.pointlist_x[i-1]+self.dx[i-1])
self.pointlist_y = [0.0]
self.pointlist_y.append(1.0)
self.mesh.setAxis("X",self.pointlist_x)
self.mesh.setAxis("Y",self.pointlist_y)
#
# End of Definitions for the mesh
#
# print " Study name:",self.study._name
#
# Definitions of materials
#
print "-"*20
print " Definition of materials :"
print "-"*20
self. clay_material = Material(name = "clay", permeability = Permeability(1.0,"m/s"))
self.cement_material = Material(name = "Cement", permeability = Permeability(2.0e-7,"m/s"))
#
print "-"*20
print " Definition of meshes :"
print "-"*20
self.clay_reg_m = CartesianMesh2D("Clay Region","XY")
self.clay_reg_m.setZone("Clay Region",index_min = Index2D(2,1),index_max = Index2D(self.nx-1,1))
#
print "-"*20
print " Definition of meshes :"
print "-"*20
self.east_bo_m = CartesianMesh2D("boundary east","XY")
self.east_bo_m.setZone("boundary east",index_min = Index2D(1,1),index_max = Index2D(1,1))
#
# Definition of regions
#
print "-"*25
print " Definition of regions :"
print "-"*25
self.regions_list = []
print type(self.clay_reg_m)," nom de la classe :",self.clay_reg_m.__class__.__name__
print type(self.clay_material)," nom de la classe :",self.clay_material.__class__.__name__
print "-"*20
self.reg1 = Region(self.clay_reg_m,self.clay_material)
self.regions_list.append(self.reg1)
#print " ---- type ----", hasattr(reg1,"material")
#print " ---- type ----", hasattr(reg1,"support")
#temp = reg1.__class__
#name = temp.__name__
#print " nom ",name
#pos = name.find('_objref_')
#print " pos ",pos
tclasses=[Region]
#for c in tclasses:
# if isinstance(reg1,c):
# print " ok ",c
#
# Definition of boundary conditions
#
print "-"*20
print " Definition of boundary conditions :"
print "-"*20
self.boundaryconditions_list = []
print "-"*10
print " east_bo_m :"
print "-"*10
self.east_bo_m = CartesianMesh2D("boundary east","XY")
self.east_min = Index2D(1,1)
self.east_max = Index2D(1,1)
#east_bo_m.setZone("boundary east",index_min = Index2D(1,1),index_max = Index2D(1,1))
#east_bo_m.setZone("boundary east",index_min = Index2D(1,1),index_max = Index2D(1,1))
self.east_bo_m.setZone("boundary east",self.east_min,self.east_max)
self.Boundary=self.east_bo_m
self.head_value=Head(2.2e-7,"m")
print " class name ",self.head_value.__class__.__name__
self.bc_east = BoundaryCondition(self.Boundary,'Dirichlet',self.head_value)
print " on verifie la classe "
if not isinstance(self.bc_east,BoundaryCondition):
raise Exception, " the instanciation of the boundary class must be verified "
print " on a verifie la classe "
print " east_bo_m : append"
self.boundaryconditions_list.append(self.bc_east)
#
print "-"*10
print " west_bo_w :"
print "-"*10
self.west_bo_m = CartesianMesh2D("boundary west","XY")
self.west_bo_m.setZone("boundary west",index_min = Index2D(41,1),index_max = Index2D(41,1))
self.Boundary=self.west_bo_m
self.Value=Head(0.0,"m")
self.bc_west = BoundaryCondition(self.Boundary,'Dirichlet',self.Value)
print " east_bo_m : append"
self.boundaryconditions_list.append(self.bc_west)
#
# Definition of initial conditions
#
self.initialconditions_list = []
self.reg1_ic = InitialCondition(self.clay_reg_m,value=Head(1.e-8,"m"))
self.initialconditions_list.append(self.reg1_ic)
# ----------------
# Darcy Resolution
# ----------------
self.title = " One dimensional simulation"
print "Title of the study : ",self.title
#
# Definition of Modflow specific parameters
#
self.mxiter = 200
self.accl = 1.0
self.hclose = 1.e-15
print " Study definition "
self.Study_type = 'Saturated'
print " SaturatedHydroModflow instance "
# self.darcy = SaturatedHydroModflow(self.study._name,self.regions_list,
# self.boundaryconditions_list,self.initialconditions_list)
self.darcy = SaturatedHydroModflow("Modflow_1/2D",self.regions_list,
self.boundaryconditions_list,self.initialconditions_list)
print " SaturatedHydroModflow setMesh method "
self.darcy.setMesh(self.mesh)
print " SaturatedHydroModflow setData method "
self.darcy.setData()
self.darcy.run()
self.filename_sip="Monod.sip"
self.modflow_sip=setSolverParameter(self.mxiter,self.accl,self.hclose)
self.modflow_sip.sauvegarde(self.filename_sip)