def decrease_lower_boundary(range_list, coeff_list, bvp_list, b_pos, amount):
assert (range_list[b_pos - 1][1] - range_list[b_pos - 1][0] - amount) > 0, \
'Decreasing boundary would eliminate previous one!'
range_list[b_pos] = (range_list[b_pos][0] - amount, range_list[b_pos][1])
range_list[b_pos - 1] = (range_list[b_pos - 1][0],
range_list[b_pos - 1][1] - amount)
for i in range(amount):
ts = bvp_list[b_pos - 1][0][-1]
bvp = bvp_list[b_pos - 1][1][-1]
bvp_list[b_pos][0].insert(0, ts)
bvp_list[b_pos][1].insert(0, bvp)
del bvp_list[b_pos - 1][0][-1]
del bvp_list[b_pos - 1][1][-1]
reg_data1 = copy.deepcopy(bvp_list[b_pos - 1])
normalize(reg_data1)
coeff_list[b_pos - 1] = get_coeffs_from_data(reg_data1, regularization,
degree)
reg_data2 = copy.deepcopy(bvp_list[b_pos])
normalize(reg_data2)
coeff_list[b_pos] = get_coeffs_from_data(reg_data2, regularization, degree)
def delete_boundary_merge_down(range_list, coeff_list, bvp_list, valid_list,
b_pos):
range_list[b_pos - 1] = (range_list[b_pos - 1][0], range_list[b_pos][1])
del range_list[b_pos]
bvp_list[b_pos - 1][0].extend(bvp_list[b_pos][0])
bvp_list[b_pos - 1][1].extend(bvp_list[b_pos][1])
del bvp_list[b_pos]
del valid_list[b_pos]
del coeff_list[b_pos]
reg_data1 = copy.deepcopy(bvp_list[b_pos - 1])
normalize(reg_data1)
coeff_list[b_pos - 1] = get_coeffs_from_data(reg_data1, regularization,
degree)
def delete_boundary_merge_up(range_list, coeff_list, bvp_list, valid_list,
b_pos):
range_list[b_pos + 1] = (range_list[b_pos][0], range_list[b_pos + 1][1])
del range_list[b_pos]
while not len(bvp_list[b_pos][0]) == 0:
bvp_list[b_pos + 1][0].insert(0, bvp_list[b_pos][0][-1])
bvp_list[b_pos + 1][1].insert(0, bvp_list[b_pos][1][-1])
del bvp_list[b_pos][0][-1]
del bvp_list[b_pos][1][-1]
del bvp_list[b_pos]
del valid_list[b_pos]
del coeff_list[b_pos]
reg_data1 = copy.deepcopy(bvp_list[b_pos])
normalize(reg_data1)
coeff_list[b_pos] = get_coeffs_from_data(reg_data1, regularization, degree)
def split_boundary_high(range_list, coeff_list, bvp_list, valid_list, b_pos):
range_list.insert(b_pos + 1,
(range_list[b_pos][1] - 1, range_list[b_pos][1]))
range_list[b_pos] = (range_list[b_pos][0], range_list[b_pos][1] - 1)
bvp_list.insert(b_pos + 1,
[[bvp_list[b_pos][0][-1]], [bvp_list[b_pos][1][-1]]])
del bvp_list[b_pos][0][-1]
del bvp_list[b_pos][1][-1]
valid_list.insert(b_pos + 1, 0)
reg_data1 = copy.deepcopy(bvp_list[b_pos])
normalize(reg_data1)
coeff_list[b_pos] = get_coeffs_from_data(reg_data1, regularization, degree)
reg_data2 = copy.deepcopy(bvp_list[b_pos + 1])
normalize(reg_data2)
coeff_list.insert(b_pos + 1,
get_coeffs_from_data(reg_data2, regularization, degree))
def increase_lower_boundary(range_list, coeff_list, bvp_list, b_pos, amount):
assert (range_list[b_pos][1] - range_list[b_pos][0] -
amount) > 0, 'Increasing boundary would eliminate it!'
range_list[b_pos] = (range_list[b_pos][0] + amount, range_list[b_pos][1])
range_list[b_pos - 1] = (range_list[b_pos - 1][0],
range_list[b_pos - 1][1] + amount)
bvp_list[b_pos - 1][0].extend(bvp_list[b_pos][0][0:amount])
bvp_list[b_pos - 1][1].extend(bvp_list[b_pos][1][0:amount])
for i in range(amount):
del bvp_list[b_pos][0][0]
del bvp_list[b_pos][1][0]
reg_data1 = copy.deepcopy(bvp_list[b_pos - 1])
normalize(reg_data1)
coeff_list[b_pos - 1] = get_coeffs_from_data(reg_data1, regularization,
degree)
reg_data2 = copy.deepcopy(bvp_list[b_pos])
normalize(reg_data2)
coeff_list[b_pos] = get_coeffs_from_data(reg_data2, regularization, degree)
def get_errors_for_boundary(range_list, coeff_list, bvp_list, valid_list,
b_pos, l_pos, r_pos):
bvp_data_norm = copy.deepcopy(bvp_list[b_idx + 1])
normalize(bvp_data_norm)
reg_error = 0
for ts, bvp in zip(bvp_data_norm[0], bvp_data_norm[1]):
pred_bvp = polynomial(ts, coeff_list[b_pos])
reg_error += (bvp - pred_bvp)**2
reg_error /= len(bvp_data_norm[0])
coeff_error = 0
avg_coeff = 0
coeff_count = 0
t_coeff_data = transpose(coeff_list[l_pos:r_pos + 1])
target_middle = range_list[b_pos][0] + (range_list[b_pos][1] -
range_list[b_pos][0]) / 2
if r_pos - b_pos > b_pos - l_pos:
edge_middle = range_list[r_pos][0] + (range_list[r_pos][1] -
range_list[r_pos][0]) / 2
else:
edge_middle = range_list[l_pos][0] + (range_list[l_pos][1] -
range_list[l_pos][0]) / 2
for c_idx, c_set in enumerate(t_coeff_data):
coeff_count += len(c_set)
for b, c in enumerate(c_set):
boundary_middle = (range_list[b + l_pos][1] +
range_list[b + l_pos][0]) / 2
if valid_list[b + l_pos] == 1:
mul = 1 * (1 - abs((target_middle - boundary_middle) /
(target_middle - edge_middle)))
elif valid_list[b + l_pos] == 0:
mul = 0 * (1 - abs((target_middle - boundary_middle) /
(target_middle - edge_middle)))
else:
mul = 0
avg_coeff += (coeff_list[b_pos][c_idx] - c)**2
coeff_error += mul * (coeff_list[b_pos][c_idx] - c)**2
# print('for tm =', target_middle, 'bm =', boundary_middle, 'mul is', mul, 'bpos coeff', coeff_list[b_pos][c_idx], 'compared coeff', c, 'contribution', mul * (coeff_list[b_pos][c_idx] - c) ** 2)
coeff_error /= coeff_count
coeff_error /= (avg_coeff / coeff_count)
size_error = 0
avg_size = 0
size_count = 0
for idx, (r_low, r_high) in enumerate(range_list[l_pos:r_pos + 1]):
boundary_middle = (r_high + r_low) / 2
if valid_list[l_pos + idx] == 1:
mul = 1 * (1 - abs((target_middle - boundary_middle) /
(target_middle - edge_middle)))
elif valid_list[l_pos + idx] == 0:
mul = 0 * (1 - abs((target_middle - boundary_middle) /
(target_middle - edge_middle)))
else:
mul = 0
size_error += mul * ((r_high - r_low) -
(range_list[b_pos][1] - range_list[b_pos][0]))**2
avg_size += (r_high - r_low)
size_count += 1
size_error /= size_count
size_error /= (avg_size / size_count)
return reg_error, coeff_error, size_error
def extract_features(dataset, missed, show=False):
result_for_event = []
ts_start = float(dataset[0][0])
ts_end = float(dataset[0][-1])
result_for_event.append(ts_start)
result_for_event.append(ts_end - ts_start)
eda_sum = 0.0
eda_cnt = 0
for e in dataset[5]:
if e != '':
eda_sum += float(e)
eda_cnt += 1
avg_eda = eda_sum / eda_cnt
result_for_event.append(avg_eda)
temp_sum = 0.0
temp_cnt = 0
for t in dataset[7]:
if t != '':
temp_sum += float(t)
temp_cnt += 1
avg_temp = temp_sum / temp_cnt
result_for_event.append(avg_temp)
fidget_list = []
for a_x, a_y, a_z in zip(dataset[1], dataset[2], dataset[3]):
if a_x != '' and a_y != '' and a_z != '':
fidget_list.append(
math.sqrt(float(a_x)**2 + float(a_y)**2 + float(a_z)**2))
avg_fidget = np.std(fidget_list)
result_for_event.append(avg_fidget)
min_bvp = float(min([float(d) for d in dataset[4] if d != '']))
max_bvp = float(max([float(d) for d in dataset[4] if d != '']))
result_for_event.append(min_bvp)
result_for_event.append(max_bvp)
# run regression
bvp_data = [dataset[0], dataset[4]]
numerical(bvp_data)
normalize(bvp_data)
# create matrices
x_data = []
y_data = []
for idx in range(len(bvp_data[0])):
row = []
for d in range(12):
row.append(bvp_data[0][idx]**d)
y_data.append([bvp_data[1][idx]])
x_data.append(row)
x_arr = np.array(x_data)
y_arr = np.array(y_data)
# apply some regularization
reg_arr = .0001 * np.identity(len(x_data[0]))
reg_arr[0, 0] = 0
# and regress
theta_arr = np.dot(np.matrix.transpose(x_arr), x_arr)
theta_arr = theta_arr + reg_arr
theta_arr = np.linalg.inv(theta_arr)
theta_arr = np.dot(theta_arr, np.matrix.transpose(x_arr))
theta_arr = np.dot(theta_arr, y_arr)
result_for_event.extend([theta[0] for theta in theta_arr.tolist()])
error = 0
for i in range(len(x_data)):
hyp = 0
for j in range(len(x_data[i])):
hyp += x_data[i][j] * theta_arr[j]
error += (hyp - y_data[i][0])**2
error /= len(dataset[0])
result_for_event.extend(error.tolist())
result_for_event.append(missed)
if show:
print(theta_arr)
line_x = np.linspace(0, 1000)
fig, ax = plt.subplots()
fig.set_size_inches(12, 8)
ax.set_xlabel('ts')
ax.set_ylabel('bvp')
ax.set_title(error)
ax.scatter(bvp_data[0], bvp_data[1])
ax.plot(line_x, polynomial(line_x, theta_arr))
plt.show()
return result_for_event
]
boundary_valid = list(map(lambda x: 1 if x else -1, boundary_valid))
print('\textracting boundary data')
boundary_data = []
for b_lower, b_upper in boundary_range:
b_data = [
raw_data[0][b_lower:b_upper], raw_data[4][b_lower:b_upper]
]
boundary_data.append(b_data)
print('\tcalculating boundary coefficients')
boundary_coeffs = []
for b_data, (b_lower, b_upper) in zip(boundary_data, boundary_range):
norm_b_data = copy.deepcopy(b_data)
normalize(norm_b_data)
boundary_coeffs.append(
get_coeffs_from_data(norm_b_data, regularization, degree))
while any(i == -1 for i in boundary_valid):
# determine best b_idx, l_idx, r_idx
b_idx = 0
l_idx = 0
r_idx = 0
for test_b_idx in range(len(boundary_range)):
if boundary_valid[test_b_idx] == -1:
test_l_idx = test_b_idx
test_r_idx = test_b_idx
while test_l_idx > 0: # and test_b_idx - test_l_idx < 50:
