def write_partition_file(scheme, alignment_path):
''' Write a raxml partitions file to make an ML tree '''
aln_dir, fname = os.path.split(alignment_path)
partition_filepath = os.path.join(aln_dir, 'partitions.txt')
partition_filehandle = open(partition_filepath, 'w')
sorted_subsets = [sub for sub in scheme]
sorted_subsets.sort(key=lambda sub: min(sub.columns), reverse=False)
write_raxml_partitions(scheme, partition_filehandle, sorted_subsets, use_lg = True)
return(partition_filepath)
def write_partition_file(scheme, alignment_path):
''' Write a raxml partitions file to make an ML tree '''
aln_dir, fname = os.path.split(alignment_path)
partition_filepath = os.path.join(aln_dir, 'partitions.txt')
partition_filehandle = open(partition_filepath, 'w')
sorted_subsets = [sub for sub in scheme]
sorted_subsets.sort(key=lambda sub: min(sub.columns), reverse=False)
write_raxml_partitions(scheme,
partition_filehandle,
sorted_subsets,
use_lg=True)
return (partition_filepath)