def __init__(self, username, password, serializer=None):
self.serializer = serializer
self.username = username
self.password = password
if not self.serializer:
self.serializer = LimsSerializer()
super(ApiClient, self).__init__(enforce_csrf_checks=False,
SERVER_NAME='localhost')
def _get_list_response(self,request,**kwargs):
'''
Return a deserialized list of dicts
'''
includes = kwargs.pop('includes', '*')
try:
logger.debug(
'get internal list response %s, %s ',
self._meta.resource_name, kwargs)
kwargs.setdefault('limit', 0)
response = self.get_list(
request,
format='json',
includes=includes,
**kwargs)
logger.debug('response: %r', response)
_data = self._meta.serializer.deserialize(
LimsSerializer.get_content(response), response['Content-Type'])
_data = _data[self._meta.collection_name]
logger.debug(' data: %s'% _data)
return _data
except Http404:
return []
except Exception as e:
# FIXME: temporary travis debug
logger.exception('on get list')
return []
def __init__(self, username, password, serializer=None):
self.serializer = serializer
self.username = username
self.password = password
if not self.serializer:
self.serializer = LimsSerializer()
super(ApiClient, self).__init__(
enforce_csrf_checks=False,
SERVER_NAME='localhost')
class Meta:
queryset = Reaction.objects.all() #.order_by('facility_id')
authentication = MultiAuthentication(BasicAuthentication(),
SessionAuthentication())
always_return_data = True
authorization= SuperUserAuthorization()
resource_name = 'reaction'
ordering = []
filtering = {}
serializer = LimsSerializer()
class Meta:
queryset = ExpressionHost.objects.all()
authentication = MultiAuthentication(BasicAuthentication(),
SessionAuthentication())
authorization= SuperUserAuthorization()
resource_name = 'expressionhost'
always_return_data = True
ordering = []
filtering = {}
serializer = LimsSerializer()
class ApiClient(django.test.client.Client):
def __init__(self, username, password, serializer=None):
self.serializer = serializer
self.username = username
self.password = password
if not self.serializer:
self.serializer = LimsSerializer()
super(ApiClient, self).__init__(
enforce_csrf_checks=False,
SERVER_NAME='localhost')
def deserialize(self, resp):
return self.serializer.deserialize(
self.serializer.get_content(resp), resp['Content-Type'])
def create_basic(self, username, password):
"""
Creates & returns the HTTP ``Authorization`` header for use with BASIC
Auth.
"""
import base64
return 'Basic %s' % base64.b64encode(
':'.join([username, password]).encode('utf-8')).decode('utf-8')
def get_credentials(self):
return self.create_basic(username=self.username, password=self.password)
def request(self, **request):
# Default to JSON for background client requests
if DJANGO_ACCEPT_PARAM not in request:
request[DJANGO_ACCEPT_PARAM] = JSON_MIMETYPE
if 'HTTP_AUTHORIZATION' not in request:
request['HTTP_AUTHORIZATION'] = self.get_credentials()
return django.test.client.Client.request(self, **request)
class ApiClient(django.test.client.Client):
def __init__(self, username, password, serializer=None):
self.serializer = serializer
self.username = username
self.password = password
if not self.serializer:
self.serializer = LimsSerializer()
super(ApiClient, self).__init__(enforce_csrf_checks=False,
SERVER_NAME='localhost')
def deserialize(self, resp):
return self.serializer.deserialize(self.serializer.get_content(resp),
resp['Content-Type'])
def create_basic(self, username, password):
"""
Creates & returns the HTTP ``Authorization`` header for use with BASIC
Auth.
"""
import base64
return 'Basic %s' % base64.b64encode(':'.join(
[username, password]).encode('utf-8')).decode('utf-8')
def get_credentials(self):
return self.create_basic(username=self.username,
password=self.password)
def request(self, **request):
# Default to JSON for background client requests
if DJANGO_ACCEPT_PARAM not in request:
request[DJANGO_ACCEPT_PARAM] = JSON_MIMETYPE
if 'HTTP_AUTHORIZATION' not in request:
request['HTTP_AUTHORIZATION'] = self.get_credentials()
return django.test.client.Client.request(self, **request)
def top_level(self, request, api_name=None):
'''
A view that returns a serialized list of all resources registers
to the API.
'''
fullschema = parse_val(
request.GET.get('fullschema', False),
'fullschema', 'boolean')
available_resources = {}
if api_name is None:
api_name = self.api_name
for name, resource in self._registry.items():
if not fullschema:
schema = self._build_reverse_url('api_get_schema', kwargs={
'api_name': api_name,
'resource_name': name,
})
else:
schema = resource.build_schema()
available_resources[name] = {
'list_endpoint':
self._build_reverse_url('api_dispatch_list', kwargs={
'api_name': api_name,
'resource_name': name,
}),
'schema': schema,
}
serializer = LimsSerializer()
content_type = serializer.get_accept_content_type(request)
serialized = serializer.serialize(available_resources, content_type)
return HttpResponse(
content=serialized,
content_type=content_type)
def top_level(self, request, api_name=None):
'''
A view that returns a serialized list of all resources registers
to the API.
'''
fullschema = parse_val(request.GET.get('fullschema', False),
'fullschema', 'boolean')
available_resources = {}
if api_name is None:
api_name = self.api_name
for name, resource in self._registry.items():
if not fullschema:
schema = self._build_reverse_url('api_get_schema',
kwargs={
'api_name': api_name,
'resource_name': name,
})
else:
schema = resource.build_schema()
available_resources[name] = {
'list_endpoint':
self._build_reverse_url('api_dispatch_list',
kwargs={
'api_name': api_name,
'resource_name': name,
}),
'schema':
schema,
}
serializer = LimsSerializer()
content_type = serializer.get_accept_content_type(request)
serialized = serializer.serialize(available_resources, content_type)
return HttpResponse(content=serialized, content_type=content_type)
class Meta:
queryset = SmallMolecule.objects.all() #.order_by('facility_id')
authentication = MultiAuthentication(BasicAuthentication(),
SessionAuthentication())
authorization= SuperUserAuthorization()
resource_name = 'smallmolecule'
# NOTE: in order to patch_list, wherein 'resource_uri' is not set,
# the method 'put' is required. TODO: figure out better allowed methods
# allowed_methods = ['get', 'patch', 'delete', 'put', 'post']
# list_allowed_methods = ['get','patch','put','delete']
always_return_data = True
ordering = []
filtering = {}
serializer = LimsSerializer()
def _get_detail_response(self,request,**kwargs):
'''
Return the detail response as a dict
'''
logger.info('_get_detail_response: %r, %r', self._meta.resource_name, kwargs)
try:
response = self.get_detail(
request,
format='json',
includes='*',
**kwargs)
_data = []
if response.status_code == 200:
_data = self._meta.serializer.deserialize(
LimsSerializer.get_content(response), response['Content-Type'])
else:
logger.info(
'no data found for %r, %r', self._meta.resource_name, kwargs)
return _data
except Http404:
return []