def search_month_for_words_crude(year, month, keywords, connection, exc=[]):
reportlist = reportstatgen.take_monthly_data_crude(connection, year, month)
result = []
for item in reportlist:
if diag_match_crude(keywords, item[1] + item[2], exclusion=exc):
result.append(item)
return result
def search_month_for_words_acid_pos(year, month, connection, exc=[]):
reportlist = reportstatgen.take_monthly_data_crude(connection, year, month)
result = []
for item in reportlist:
if "病理號" in item[2]:
descolumn = item[2].split("病理號")[0]
else:
descolumn = item[2]
if diag_match_acid(item[1] + descolumn) == AFSPOS:
result.append((item[0], item[1], descolumn, item[3]))
return result
def search_month_for_words_re(year, month, expression, connection, exc=[]):
reportlist = reportstatgen.take_monthly_data_crude(connection, year, month)
result = []
for item in reportlist:
if "病理號" in item[2]:
descolumn = item[2].split("病理號")[0]
else:
descolumn = item[2]
match = diag_match_re(expression, item[1] + descolumn)
if match:
result.append((item[0], match.group(0), item[1], descolumn))
return result
def breastclassify_month(year, month, connection, exc=[]):
reportlistin = reportstatgen.take_monthly_data_crude(
connection, year, month)
reportlistout = reportstatgen.take_monthly_data_crude_p(
connection, year, month)
reportlistsouth = reportstatgen.take_monthly_data_crude_n(
connection, year, month)
reportlist = reportlistin + reportlistout + reportlistsouth
result = []
for item in reportlist:
container = {
reportreader.AGE_COLUMN: [],
reportreader.DIAG_COLUMN: [],
reportreader.DESC_COLUMN: [],
reportreader.REF_COLOMN: [],
reportreader.PATHOLOGYNO: []
}
container[reportreader.PATHOLOGYNO] = item[0]
container[reportreader.DIAG_COLUMN] = item[1].split("|")
container[reportreader.DESC_COLUMN] = item[2].split("|")
breastresult = breastanalysis.breast_classify(container)
if breastresult == None:
continue
elif breastresult[0] == breastmacro.BREAST:
ihcresult = breastanalysis.find_erprher(container)
output = {}
output[reportreader.PATHOLOGYNO] = container[
reportreader.PATHOLOGYNO]
output[breastmacro.BREASTCLASS] = breastresult[1]
output[reportreader.DIAGNOSIS] = breastresult[2]
output[breastmacro.ER] = ihcresult[breastmacro.ER]
output[breastmacro.PR] = ihcresult[breastmacro.PR]
output[breastmacro.HERTWO] = ihcresult[breastmacro.HERTWO]
output[breastmacro.AR] = ihcresult[breastmacro.AR]
result.append(output)
elif breastresult[2] == breastmacro.METAC:
#ihcresult = breastanalysis.find_erprher(container)
origin = " ".join(container[reportreader.DESC_COLUMN])
print(origin)
match = re.search("[Ii]mmu.*\.", origin)
ihctext = None
if match:
ihctext = match.group(0).split(")")
print(ihctext)
ihcresult = breastanalysis.find_erprher_meta(ihctext)
print(ihcresult)
output = {}
output[reportreader.PATHOLOGYNO] = container[
reportreader.PATHOLOGYNO]
output[breastmacro.BREASTCLASS] = breastresult[1]
output[reportreader.DIAGNOSIS] = breastmacro.METAC
output[breastmacro.ER] = ihcresult[breastmacro.ER]
output[breastmacro.PR] = ihcresult[breastmacro.PR]
output[breastmacro.HERTWO] = ihcresult[breastmacro.HERTWO]
output[breastmacro.AR] = ihcresult[breastmacro.AR]
output[reportreader.DIAG_COLUMN] = container[
reportreader.DIAG_COLUMN]
output[reportreader.DESC_COLUMN] = container[
reportreader.DESC_COLUMN]
if "axilla" in ",".join(container[reportreader.DIAG_COLUMN]):
output[META_CATEGORY] = META_AXILLARY
else:
output[META_CATEGORY] = META_DISTANT
if ihctext:
output["ihctext"] = ihctext
else:
output["ihctext"] = "None"
#print(output)
result.append(output)
return result