import sys, os
import argparse
from rhombus.scripts.run import main as rhombus_main, set_config
from rhombus.lib.utils import cout, cerr, cexit
from genaf_base.models.handler import DBHandler
def greet():
cerr('command line utility for genaf-base')
def usage():
cerr('genaf_base-run - command line utility for genaf-base')
cerr('usage:')
cerr('\t%s scriptname [options]' % sys.argv[0])
sys.exit(0)
set_config(environ='RHOMBUS_CONFIG',
paths=['genaf_base.scripts.'],
greet=greet,
usage=usage,
dbhandler_class=DBHandler)
main = rhombus_main
import sys, os
import argparse
from rhombus.scripts.run import main as rhombus_main, set_config
from rhombus.lib.utils import cout, cerr, cexit
from genaf.models.handler import DBHandler
def greet():
cerr('genaf-run')
def usage():
cerr('genaf-run usage')
print("genaf run.py")
set_config( environ='GENAF_CONFIG',
paths = [ 'fatools.scripts.', 'genaf.scripts.' ],
greet = greet,
usage = usage,
dbhandler_class = DBHandler
)
main = rhombus_main
import sys, os
import argparse
from rhombus.scripts.run import main as rhombus_main, set_config
from rhombus.lib.utils import cout, cerr, cexit
from cmsfix.models.handler import DBHandler
def greet():
cerr('cmsfix-run - command line utility for CMSFix/rhombus')
def usage():
cerr('cmsfix-run - command line utility for CMSFix/rhombus')
cerr('usage:')
cerr('\t%s scriptname [options]' % sys.argv[0])
sys.exit(0)
set_config( environ='CMSFIX_CONFIG',
paths = ['cmsfix.scripts.'],
greet = greet,
usage = usage,
dbhandler_class = DBHandler
)
main = rhombus_main
import sys, os
import argparse
from rhombus.scripts.run import main as rhombus_main, set_config
from rhombus.lib.utils import cout, cerr, cexit
from genaf_snp.models.handler import DBHandler
def greet():
cerr('command line utility for genaf-snp')
def usage():
cerr('genaf_snp-run - command line utility for genaf-snp')
cerr('usage:')
cerr('\t%s scriptname [options]' % sys.argv[0])
sys.exit(0)
set_config(environ='GENAF_CONFIG',
paths=['spatools.scripts.', 'genaf_snp.scripts.'],
greet=greet,
usage=usage,
dbhandler_class=DBHandler,
includes=['genaf.includes'])
main = rhombus_main