def testLinkWithNotExistentGraph(self):
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
rofile = rodir+"/"+"subdir1/subdir1-file.txt"
# Apply non-exietent graph annotation
annotation_graph_filename = os.path.join(os.path.abspath(rodir), "annotate-none.rdf")
rouri = ro_manifest.getRoUri(rodir)
args = ["ro", "annotate", rodir+"/", "-g", annotation_graph_filename ]
with SwitchStdout(self.outstr):
status = ro.runCommand(ro_test_config.CONFIGDIR, ro_test_config.ROBASEDIR, args)
outtxt = self.outstr.getvalue()
assert status == 0, outtxt
# Read manifest and check for annotation
annotations = ro_annotation.getAllAnnotations(rodir)
expected_annotations = (
[ ( rouri, DCTERMS.identifier, rdflib.Literal('ro-testRoAnnotate') )
, ( rouri, DCTERMS.description, rdflib.Literal('RO test annotation') )
, ( rouri, DCTERMS.title, rdflib.Literal('RO test annotation') )
, ( rouri, DCTERMS.creator, rdflib.Literal('Test User') )
, ( rouri, RDF.type, RO.ResearchObject )
])
count = 0
for next in list(annotations):
if ( # not isinstance(next[2], rdflib.BNode) and
not next[1] in [ORE.aggregates, DCTERMS.created] and
not next[1] == DCTERMS.created ):
log.debug("- next %s"%(str(next[0])) )
log.debug(" - (%s, %s)"%(str(next[1]),str(next[2])) )
if next in expected_annotations:
count += 1
else:
self.assertTrue(False, "Not expected (%d) %s"%(count, repr(next)))
self.assertEqual(count,5)
# Clean up
self.deleteTestRo(rodir)
return
def testAnnotateWildcardPattern2(self):
"""
Same as previous test, but includes filenames with spaces and hashes
"""
rodir = self.createTestRo(testbase, "data/ro-test-1", "RO test annotation", "ro-testRoAnnotate")
self.populateTestRo(testbase, rodir)
# Apply annotation to filename pattern
rouri = ro_manifest.getRoUri(rodir)
args = ["ro", "annotate"
,"-d", rodir+"/"
, "-w", "\\.txt$"
, "dcterms:description", "pattern annotation" ]
with SwitchStdout(self.outstr):
status = ro.runCommand(ro_test_config.CONFIGDIR, ro_test_config.ROBASEDIR, args)
outtxt = self.outstr.getvalue()
assert status == 0, outtxt
# Read manifest and check for annotation
annotations = ro_annotation.getAllAnnotations(rodir)
res_spc_uri = ro_manifest.getComponentUriAbs(rodir, "filename%20with%20spaces.txt")
res_hsh_uri = ro_manifest.getComponentUriAbs(rodir, "filename%23with%23hashes.txt")
resource1uri = ro_manifest.getComponentUriAbs(rodir, "subdir1/subdir1-file.txt")
resource2uri = ro_manifest.getComponentUriAbs(rodir, "subdir2/subdir2-file.txt")
expected_annotations = (
[ ( rouri, DCTERMS.identifier, rdflib.Literal('ro-testRoAnnotate') )
, ( rouri, DCTERMS.description, rdflib.Literal('RO test annotation') )
, ( rouri, DCTERMS.title, rdflib.Literal('RO test annotation') )
, ( rouri, DCTERMS.creator, rdflib.Literal('Test User') )
, ( rouri, RDF.type, RO.ResearchObject )
, ( res_spc_uri, DCTERMS.description, rdflib.Literal('pattern annotation') )
, ( res_hsh_uri, DCTERMS.description, rdflib.Literal('pattern annotation') )
, ( resource1uri, DCTERMS.description, rdflib.Literal('pattern annotation') )
, ( resource2uri, DCTERMS.description, rdflib.Literal('pattern annotation') )
])
count = 0
for next in list(annotations):
if ( not isinstance(next[2], rdflib.BNode) and
not next[1] in [ORE.aggregates, DCTERMS.created] ):
log.debug("- next %s"%(str(next[0])) )
log.debug(" - (%s, %s)"%(str(next[1]),str(next[2])) )
if next in expected_annotations:
count += 1
else:
self.assertTrue(False, "Not expected (%d) %s"%(count, repr(next)))
self.assertEqual(count,9)
# Clean up
#self.deleteTestRo(rodir)
return
def testAddGetAllAnnotations(self):
rodir = self.createTestRo(testbase, "data/ro-test-1", "Test get all annotations", "ro-testRoAnnotate")
roresource = "subdir1/subdir1-file.txt"
# Add anotations for file
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"type", "Test file")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"description", "File in test research object")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"note", "Research object file created for annotation testing")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"title", "Test file in RO")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"created", "2011-12-07")
ro_annotation._addSimpleAnnotation(ro_config, rodir, roresource,
"rdf:type", ROTERMS.resource)
# Retrieve the file anotations
annotations = ro_annotation.getAllAnnotations(rodir)
rouri = ro_manifest.getRoUri(rodir)
resourceuri = ro_manifest.getComponentUri(rodir, roresource)
log.debug("resourceuri: %s"%(resourceuri))
expected_annotations = (
[ (rouri, DCTERMS.description, rdflib.Literal('Test get all annotations'))
, (rouri, DCTERMS.title, rdflib.Literal('Test get all annotations'))
, (rouri, DCTERMS.created, rdflib.Literal('unknown'))
, (rouri, DCTERMS.creator, rdflib.Literal('Test User'))
, (rouri, DCTERMS.identifier, rdflib.Literal('ro-testRoAnnotate'))
, (rouri, RDF.type, RO.ResearchObject)
, (resourceuri, DCTERMS.type, rdflib.Literal('Test file'))
, (resourceuri, DCTERMS.description, rdflib.Literal('File in test research object'))
, (resourceuri, ROTERMS.note, rdflib.Literal('Research object file created for annotation testing'))
, (resourceuri, DCTERMS.title, rdflib.Literal('Test file in RO'))
, (resourceuri, DCTERMS.created, rdflib.Literal('2011-12-07'))
, (resourceuri, RDF.type, ROTERMS.resource)
])
for i in range(12+1+6): # Annotations + aggregations
next = annotations.next()
#log.debug("Next %s"%(repr(next)))
if ( next not in expected_annotations and
next[1] != DCTERMS.created and
next[1] != ORE.aggregates ):
self.assertTrue(False, "Not expected (%d) %s"%(i, repr(next)))
self.assertRaises(StopIteration, annotations.next)
self.deleteTestRo(rodir)
return