"""
import sys
import os
from roi.pre import combine4d
from roi.io import read_nifti, write_nifti
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError('Only one argument allowed')
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = ["warpolygon0.nii",
"warpolygon1.nii",
"warpolygon2.nii",
"warpolygon3.nii",
"warpolygon4.nii",
"warpolygon5.nii"]
# Create the niftis, remove and arn if they do not exist
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis),
os.path.join(datadir, "warpolygon.nii"))
"""Combine ar* functional data in along their 4th axes.
usage: combined_func_biasbox datadir
"""
import sys
import os
from roi.pre import combine4d
from roi.io import read_nifti, write_nifti
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError('Only one argument allowed')
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = [
"warbiasbox0.nii", "warbiasbox1.nii", "warbiasbox2.nii", "warbiasbox3.nii",
"warbiasbox4.nii"
]
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis), os.path.join(datadir, "warbiasbox.nii"))
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError('Only one argument allowed')
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = [
"warbutterfly0.nii", "warbutterfly1.nii", "warbutterfly2.nii",
"warbutterfly3.nii", "warbutterfly4.nii", "warbutterfly5.nii",
"warbutterfly6.nii", "warbutterfly7.nii", "warbutterfly8.nii",
"warbutterfly9.nii"
]
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
# Create the niftis, remove and arn if they do not exist
niftis = []
for fname in fnames:
try:
niftis.append(read_nifti(os.path.join(datadir, fname)))
except IOError:
print("Warning: {0} not found".format(fname))
pass
#niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis), os.path.join(datadir, "warbutterfly.nii"))
"""Combine ar* functional data in along their 4th axes.
usage: combined_func_fh datadir
"""
import sys
import os
from roi.pre import combine4d
from roi.io import read_nifti, write_nifti
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError("Only one argument allowed")
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = ["warfh0.nii", "warfh1.nii", "warfh2.nii", "warfh3.nii", "warfh4.nii", "warfh5.nii", "warfh6.nii"]
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis), os.path.join(datadir, "warfh.nii"))
"""Combine ar* functional data in along their 4th axes.
usage: combined_func_redgreen datadir
"""
import sys
import os
from roi.pre import combine4d
from roi.io import read_nifti, write_nifti
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError('Only one argument allowed')
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = [
"warredgreen0.nii", "warredgreen1.nii", "warredgreen2.nii",
"warredgreen3.nii", "warredgreen4.nii", "warredgreen5.nii"
]
# Create the niftis, remove and arn if they do not exist
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis), os.path.join(datadir, "warredgreen.nii"))
"""Combine ar* functional data in along their 4th axes.
usage: combined_func_polygon datadir
"""
import sys
import os
from roi.pre import combine4d
from roi.io import read_nifti, write_nifti
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError('Only one argument allowed')
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = [
"warpolygon0.nii", "warpolygon1.nii", "warpolygon2.nii", "warpolygon3.nii",
"warpolygon4.nii", "warpolygon5.nii"
]
# Create the niftis, remove and arn if they do not exist
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis), os.path.join(datadir, "warpolygon.nii"))
"""Combine ar* functional data in along their 4th axes.
usage: combined_func_clock datadir
"""
import sys
import os
from roi.pre import combine4d
from roi.io import read_nifti, write_nifti
# Process the argv
if len(sys.argv[1:]) != 1:
raise ValueError('Only one argument allowed')
datadir = sys.argv[1]
# Name the names, then read in the data
fnames = ["warclock0.nii", "warclock1.nii", "warclock2.nii", "warclock3.nii"]
for i, fname in enumerate(fnames):
if not os.path.exists(os.path.join(datadir, fname)):
print("Missing {0}".format(fname))
fnames.pop(i)
niftis = [read_nifti(os.path.join(datadir, fname)) for fname in fnames]
# Combine the nifti objects and write the result
write_nifti(combine4d(niftis), os.path.join(datadir, "warclock.nii"))