Copyright (c) 2009 Wellcome Trust Sanger Institute. All rights reserved.
'''
import os
from genepy import util
import sys
import loaders.db as db
import ropy.util
import ropy.query
from optparse import OptionParser
from ropy.log import LogSetup
### ---------------------------------------------------------------------------
### Logging setup
### ---------------------------------------------------------------------------
logsetup = LogSetup()
logsetup.logname = "genepy-multiloader"
logsetup.logpath = "%s/logs.txt" % os.path.realpath(os.path.dirname(__file__))
logsetup.setupLogging()
logger = logsetup.logger
### ---------------------------------------------------------------------------
### main
### ---------------------------------------------------------------------------
def main():
usage = "usage: %prog [Options]"
parser = OptionParser(usage=usage)
parser.add_option("-l", "--list", metavar="FILE", help="FILE containing the list of all organism common names and its associated file to load", action="store", type="string", dest="list")
parser.add_option("-D", action="store", dest="dbhost")
### ---------------------------------------------------------------------------
### Database Setup
### ---------------------------------------------------------------------------
host=config.get('Connection', 'host')
database=config.get('Connection', 'database')
user=config.get('Connection', 'user')
password=config.get('Connection', 'password')
connectionFactory = ConnectionFactory(host, database, user, password)
### ---------------------------------------------------------------------------
### Log Setup
### ---------------------------------------------------------------------------
try:
logsetup = LogSetup()
logsetup.logname = "genepy"
logsetup.logpath = config.get('Logging', 'path')
logsetup.setupLogging()
logger = logsetup.logger
except Exception, e:
print e
print "Could not set up the logging, is the path set in the configuration file correct?"
sys.exit(1)
### ---------------------------------------------------------------------------
def main():
pass
if __name__ == '__main__':