def setGetTimeEnd(testId):
print string.ljust("Check " + testId, rpadding),
errorFlag = False
value = random.random() * 10
rrPython.setTimeEnd(value)
if expectApproximately(rrPython.getTimeEnd(), value, 1E-6) == False:
errorFlag = True
print passMsg(errorFlag)
def setGetTimeEnd(testId):
print string.ljust ("Check " + testId, rpadding),
errorFlag = False
value = random.random ()*10
rrPython.setTimeEnd (value)
if expectApproximately (rrPython.getTimeEnd (), value, 1E-6) == False:
errorFlag = True
print passMsg (errorFlag)
import rrPython
import os
modelPath = ('C:\\roadRunner\\models\\feedback.xml')
sbml = rrPython.loadSBMLFromFile(modelPath)
rrPython.setTimeStart(0.0)
rrPython.setTimeEnd(3.0)
rrPython.setNumPoints(20)
rrPython.setSteadyStateSelectionList("time S1 S2 S3 S4")
results = rrPython.simulate()
print results
import rrPython
import timeit
import cmd
modelPath = raw_input('Model location: (C:\\RoadRunner\\Models\\feedback.xml, etc.)')
rrPython.loadSBMLFromFile(modelPath)
simulations = raw_input('Number of simulations:')
start_Time = raw_input('Start time:')
start_Time = float(start_Time)
end_Time = raw_input('End time:')
end_Time = float(end_Time)
number_of_points = raw_input('Number of points:')
number_of_points = int(number_of_points)
simulations = int(simulations)
rrPython.setTimeStart(start_Time)
rrPython.setTimeEnd(end_Time)
rrPython.setNumPoints(number_of_points)
t = timeit.Timer('rrPython.simulate()','import rrPython')
totalTime = t.timeit(number = simulations)
meanTime = totalTime/simulations
print 'Average simulation time: ' + str(meanTime) + ' seconds'
import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')
function = 'setTimeEnd'
rrPython.loadSBMLFromFile('C:\\RoadRunner\\Models\\feedback.xml')
try:
end = rrPython.setTimeEnd(5.0)
if str(end) is not False:
result = 'True'
else:
result = 'False'
except:
result = 'False'
PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv', 'a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()
import rrPython
import os
modelPath = ('C:\\roadRunner\\models\\feedback.xml')
sbml = rrPython.loadSBMLFromFile(modelPath)
rrPython.setTimeStart(0.0)
rrPython.setTimeEnd(3.0)
rrPython.setNumPoints(20)
rrPython.setSteadyStateSelectionList("time S1 S2 S3 S4")
results = rrPython.simulate()
print results
import rrPython
import os
import csv
os.chdir("C:\\RoadRunner\\bin")
function = "setTimeEnd"
rrPython.loadSBMLFromFile("C:\\RoadRunner\\Models\\feedback.xml")
try:
end = rrPython.setTimeEnd(5.0)
if str(end) is not False:
result = "True"
else:
result = "False"
except:
result = "False"
PythonTestResults = open("C:\\RoadRunner\\PythonTestResults.csv", "a")
writer = csv.writer(PythonTestResults)
writevar = function + "=" + result
writer.writerow([writevar])
PythonTestResults.close()
import os
import rrPython
print 'RoadRunner Build Date: ' + rrPython.getCopyright()
startTime = 0
endTime = 5
numPoints = 50
selList="time,S1,S2"
result = rrPython.loadSBMLFromFile("..\\Models\\test_1.xml")
rrPython.setTimeStart(startTime)
rrPython.setTimeEnd(endTime)
rrPython.setNumPoints(numPoints)
rrPython.setTimeCourseSelectionList(selList)
k = rrPython.simulate()
print k
print "done"
