def anova_fc():
glm.l2_anova(
"~/ni_data/ofM.dr/fc/drs_seed/",
workflow_name="anova_fc",
keep_work=True,
mask="~/ni_data/templates/DSURQEc_200micron_mask.nii.gz",
include={
'session': ['ofM', 'ofMaF', 'ofMcF1', 'ofMcF2', 'ofMpF'],
'subject': ['5691', "5689", "5690", "5700"],
},
)
def anova_fc():
from samri.pipelines import preprocess, glm
glm.l2_anova("~/ni_data/ofM.dr/fc/drs_seed/",
workflow_name="anova_fc",
keep_work=True,
mask="/usr/share/mouse-brain-atlases/dsurqec_200micron_mask.nii",
include={
'session':['ofM','ofMaF','ofMcF1','ofMcF2','ofMpF'],
'subject':['5691',"5689","5690","5700"],
},
)
def anova_fc():
from samri.pipelines import preprocess, glm
glm.l2_anova(
"~/ni_data/ofM.dr/fc/drs_seed/",
workflow_name="anova_fc",
keep_work=True,
mask="/usr/share/mouse-brain-atlases/dsurqec_200micron_mask.nii",
include={
'session': ['ofM', 'ofMaF', 'ofMcF1', 'ofMcF2', 'ofMpF'],
'subject': ['5691', "5689", "5690", "5700"],
},
)
def anova():
from samri.fetch.local import roi_from_atlaslabel
from samri.pipelines import preprocess, glm
glm.l2_anova("~/ni_data/ofM.dr/bids/l1/generic/",
workflow_name="anova",
keep_work=False,
mask="/usr/share/mouse-brain-atlases/dsurqec_200micron_mask.nii",
include={
'session':['ofM','ofMaF','ofMcF1','ofMcF2','ofMpF'],
'subject':['5691',"5689","5690","5700","6451","6460","6456","6461","6462"],
},
)
def anova():
from samri.fetch.local import roi_from_atlaslabel
from samri.pipelines import preprocess, glm
glm.l2_anova(
"~/ni_data/ofM.dr/bids/l1/generic/",
workflow_name="anova",
keep_work=False,
mask='/usr/share/mouse-brain-atlases/dsurqec_200micron_mask.nii',
include={
'session': ['ofM', 'ofMaF', 'ofMcF1', 'ofMcF2', 'ofMpF'],
'subject': [
'5691', "5689", "5690", "5700", "6451", "6460", "6456", "6461",
"6462"
],
},
)
def anova():
from samri.fetch.local import roi_from_atlaslabel
roi = roi_from_atlaslabel(
"~/ni_data/templates/roi/DSURQEc_200micron_labels.nii",
mapping="~/ni_data/templates/roi/DSURQE_mapping.csv",
label_names=["cortex"],
save_as="/tmp/ctx.nii.gz")
glm.l2_anova(
"~/ni_data/ofM.dr/l1/composite/",
workflow_name="anova_ctx",
keep_work=False,
mask="/tmp/ctx.nii.gz",
include={
'session': ['ofM', 'ofMaF', 'ofMcF1', 'ofMcF2', 'ofMpF'],
'subject': ['5691', "5689", "5690", "5700"],
},
)
def anova():
from samri.fetch.local import roi_from_atlaslabel
from samri.pipelines import preprocess, glm
#roi = roi_from_atlaslabel("/usr/share/mouse-brain-atlases/dsurqec_40micron_labels.nii",
# mapping="/usr/share/mouse-brain-atlases/dsurqec_mapping.csv",
# label_names=["cortex"],
# save_as="/tmp/ctx.nii.gz")
glm.l2_anova(
"~/ni_data/ofM.dr/bids/l1/generic/",
workflow_name="anova",
keep_work=False,
mask="/usr/share/mouse-brain-atlases/dsurqec_200micron_mask.nii",
include={
'session': ['ofM', 'ofMaF', 'ofMcF1', 'ofMcF2', 'ofMpF'],
'subject': [
'5691', "5689", "5690", "5700", "6451", "6460", "6456", "6461",
"6462"
],
},
)