def configuration(parent_package='', top_path=None): from scipy._build_utils.system_info import get_info from numpy.distutils.misc_util import Configuration from scipy._build_utils import (get_g77_abi_wrappers, uses_blas64, blas_ilp64_pre_build_hook, get_f2py_int64_options) config = Configuration('isolve', parent_package, top_path) if uses_blas64(): lapack_opt = get_info('lapack_ilp64_opt') f2py_options = get_f2py_int64_options() pre_build_hook = blas_ilp64_pre_build_hook(lapack_opt) else: lapack_opt = get_info('lapack_opt') f2py_options = None pre_build_hook = None # iterative methods methods = [ 'BiCGREVCOM.f.src', 'BiCGSTABREVCOM.f.src', 'CGREVCOM.f.src', 'CGSREVCOM.f.src', # 'ChebyREVCOM.f.src', 'GMRESREVCOM.f.src', # 'JacobiREVCOM.f.src', 'QMRREVCOM.f.src', # 'SORREVCOM.f.src' ] Util = ['getbreak.f.src'] sources = Util + methods + ['_iterative.pyf.src'] sources = [join('iterative', x) for x in sources] sources += get_g77_abi_wrappers(lapack_opt) ext = config.add_extension('_iterative', sources=sources, f2py_options=f2py_options, extra_info=lapack_opt) ext._pre_build_hook = pre_build_hook config.add_data_dir('tests') return config
def configuration(parent_package='', top_path=None): from scipy._build_utils.system_info import get_info from numpy.distutils.misc_util import Configuration from scipy._build_utils import (get_g77_abi_wrappers, gfortran_legacy_flag_hook, blas_ilp64_pre_build_hook, uses_blas64, get_f2py_int64_options) if uses_blas64(): lapack_opt = get_info('lapack_ilp64_opt', 2) pre_build_hook = (gfortran_legacy_flag_hook, blas_ilp64_pre_build_hook(lapack_opt)) f2py_options = get_f2py_int64_options() else: lapack_opt = get_info('lapack_opt') pre_build_hook = gfortran_legacy_flag_hook f2py_options = None config = Configuration('arpack', parent_package, top_path) arpack_sources = [join('ARPACK', 'SRC', '*.f')] arpack_sources.extend([join('ARPACK', 'UTIL', '*.f')]) arpack_sources += get_g77_abi_wrappers(lapack_opt) config.add_library('arpack_scipy', sources=arpack_sources, include_dirs=[join('ARPACK', 'SRC')], _pre_build_hook=pre_build_hook) ext = config.add_extension('_arpack', sources=['arpack.pyf.src'], libraries=['arpack_scipy'], f2py_options=f2py_options, extra_info=lapack_opt, depends=arpack_sources) ext._pre_build_hook = pre_build_hook config.add_data_dir('tests') # Add license files config.add_data_files('ARPACK/COPYING') return config
def configuration(parent_package='', top_path=None): import warnings from numpy.distutils.misc_util import Configuration from scipy._build_utils.system_info import get_info from scipy._build_utils import (uses_blas64, blas_ilp64_pre_build_hook, combine_dict) config = Configuration('odr', parent_package, top_path) libodr_files = ['d_odr.f', 'd_mprec.f', 'dlunoc.f', 'd_lpk.f'] if uses_blas64(): blas_info = get_info('blas_ilp64_opt') pre_build_hook = blas_ilp64_pre_build_hook(blas_info) else: blas_info = get_info('blas_opt') pre_build_hook = None odrpack_src = [join('odrpack', x) for x in libodr_files] config.add_library('odrpack', sources=odrpack_src, _pre_build_hook=pre_build_hook) sources = ['__odrpack.c'] cfg = combine_dict(blas_info, numpy_nodepr_api, libraries=['odrpack'], include_dirs=['.']) ext = config.add_extension('__odrpack', sources=sources, depends=(['odrpack.h'] + odrpack_src), **cfg ) ext._pre_build_hook = pre_build_hook config.add_data_dir('tests') return config
def configuration(parent_package='', top_path=None): from numpy.distutils.misc_util import Configuration from scipy._build_utils.system_info import get_info from scipy._build_utils import (gfortran_legacy_flag_hook, blas_ilp64_pre_build_hook, combine_dict, uses_blas64, get_f2py_int64_options) from scipy._build_utils.compiler_helper import ( set_cxx_flags_hook, set_cxx_flags_clib_hook, set_c_flags_hook) config = Configuration('optimize', parent_package, top_path) include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')] minpack_src = [join('minpack', '*f')] config.add_library('minpack', sources=minpack_src) config.add_extension('_minpack', sources=['_minpackmodule.c'], libraries=['minpack'], depends=(["minpack.h", "__minpack.h"] + minpack_src), include_dirs=include_dirs, **numpy_nodepr_api) config.add_library('rectangular_lsap', sources='rectangular_lsap/rectangular_lsap.cpp', headers='rectangular_lsap/rectangular_lsap.h', _pre_build_hook=set_cxx_flags_clib_hook) _lsap = config.add_extension( '_lsap_module', sources=['_lsap_module.c'], libraries=['rectangular_lsap'], depends=(['rectangular_lsap/rectangular_lsap.cpp', 'rectangular_lsap/rectangular_lsap.h']), include_dirs=include_dirs, **numpy_nodepr_api) _lsap._pre_build_hook = set_c_flags_hook rootfind_src = [join('Zeros', '*.c')] rootfind_hdr = [join('Zeros', 'zeros.h')] config.add_library('rootfind', sources=rootfind_src, headers=rootfind_hdr, **numpy_nodepr_api) config.add_extension('_zeros', sources=['zeros.c'], libraries=['rootfind'], depends=(rootfind_src + rootfind_hdr), **numpy_nodepr_api) if uses_blas64(): lapack = get_info('lapack_ilp64_opt') f2py_options = get_f2py_int64_options() pre_build_hook = blas_ilp64_pre_build_hook(lapack) else: lapack = get_info('lapack_opt') f2py_options = None pre_build_hook = None lapack = combine_dict(lapack, numpy_nodepr_api) sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f'] ext = config.add_extension('_lbfgsb', sources=[join('lbfgsb_src', x) for x in sources], f2py_options=f2py_options, **lapack) ext._pre_build_hook = pre_build_hook sources = ['moduleTNC.c', 'tnc.c'] config.add_extension('moduleTNC', sources=[join('tnc', x) for x in sources], depends=[join('tnc', 'tnc.h')], **numpy_nodepr_api) config.add_extension('_cobyla', sources=[join('cobyla', x) for x in [ 'cobyla.pyf', 'cobyla2.f', 'trstlp.f']], **numpy_nodepr_api) sources = ['minpack2.pyf', 'dcsrch.f', 'dcstep.f'] config.add_extension('minpack2', sources=[join('minpack2', x) for x in sources], **numpy_nodepr_api) sources = ['slsqp.pyf', 'slsqp_optmz.f'] ext = config.add_extension('_slsqp', sources=[ join('slsqp', x) for x in sources], **numpy_nodepr_api) ext._pre_build_hook = gfortran_legacy_flag_hook config.add_data_files('__nnls.pyi') ext = config.add_extension('__nnls', sources=[ join('__nnls', x) for x in ["nnls.f", "nnls.pyf"]], **numpy_nodepr_api) ext._pre_build_hook = gfortran_legacy_flag_hook config.add_extension('_group_columns', sources=['_group_columns.c'],) config.add_extension('_bglu_dense', sources=['_bglu_dense.c']) config.add_subpackage('_lsq') config.add_subpackage('_trlib') config.add_subpackage('_trustregion_constr') # Cython optimize API for zeros functions config.add_subpackage('cython_optimize') config.add_data_files('cython_optimize.pxd') config.add_data_files(os.path.join('cython_optimize', '*.pxd')) config.add_extension( 'cython_optimize._zeros', sources=[os.path.join('cython_optimize', '_zeros.c')]) config.add_subpackage('_shgo_lib') config.add_data_dir('_shgo_lib') # HiGHS linear programming libraries and extensions config.add_subpackage('_highs') config.add_data_files(os.path.join('_highs', 'cython', 'src', '*.pxd')) config.add_data_dir('tests') # Add license files config.add_data_files('lbfgsb_src/README') return config
def configuration(parent_package='', top_path=None): from distutils.sysconfig import get_python_inc from scipy._build_utils.system_info import get_info, numpy_info from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs from scipy._build_utils import (get_g77_abi_wrappers, gfortran_legacy_flag_hook, blas_ilp64_pre_build_hook, get_f2py_int64_options, uses_blas64) config = Configuration('linalg', parent_package, top_path) lapack_opt = get_info('lapack_opt') atlas_version = ([ v[3:-3] for k, v in lapack_opt.get('define_macros', []) if k == 'ATLAS_INFO' ] + [None])[0] if atlas_version: print(('ATLAS version: %s' % atlas_version)) if uses_blas64(): lapack_ilp64_opt = get_info('lapack_ilp64_opt', 2) # fblas: sources = ['fblas.pyf.src'] sources += get_g77_abi_wrappers(lapack_opt) depends = ['fblas_l?.pyf.src'] config.add_extension('_fblas', sources=sources, depends=depends, extra_info=lapack_opt) if uses_blas64(): sources = ['fblas_64.pyf.src'] + sources[1:] ext = config.add_extension('_fblas_64', sources=sources, depends=depends, f2py_options=get_f2py_int64_options(), extra_info=lapack_ilp64_opt) ext._pre_build_hook = blas_ilp64_pre_build_hook(lapack_ilp64_opt) # flapack: sources = ['flapack.pyf.src'] sources += get_g77_abi_wrappers(lapack_opt) depends = [ 'flapack_gen.pyf.src', 'flapack_gen_banded.pyf.src', 'flapack_gen_tri.pyf.src', 'flapack_pos_def.pyf.src', 'flapack_pos_def_tri.pyf.src', 'flapack_sym_herm.pyf.src', 'flapack_other.pyf.src', 'flapack_user.pyf.src' ] config.add_extension('_flapack', sources=sources, depends=depends, extra_info=lapack_opt) if uses_blas64(): sources = ['flapack_64.pyf.src'] + sources[1:] ext = config.add_extension('_flapack_64', sources=sources, depends=depends, f2py_options=get_f2py_int64_options(), extra_info=lapack_ilp64_opt) ext._pre_build_hook = blas_ilp64_pre_build_hook(lapack_ilp64_opt) if atlas_version is not None: # cblas: config.add_extension('_cblas', sources=['cblas.pyf.src'], depends=['cblas.pyf.src', 'cblas_l1.pyf.src'], extra_info=lapack_opt) # clapack: config.add_extension('_clapack', sources=['clapack.pyf.src'], depends=['clapack.pyf.src'], extra_info=lapack_opt) # _flinalg: config.add_extension('_flinalg', sources=[join('src', 'det.f'), join('src', 'lu.f')], extra_info=lapack_opt) # _interpolative: ext = config.add_extension( '_interpolative', sources=[join('src', 'id_dist', 'src', '*.f'), "interpolative.pyf"], extra_info=lapack_opt) ext._pre_build_hook = gfortran_legacy_flag_hook # _solve_toeplitz: config.add_extension('_solve_toeplitz', sources=[('_solve_toeplitz.c')], include_dirs=[get_numpy_include_dirs()]) # _matfuncs_sqrtm_triu: if int(os.environ.get('SCIPY_USE_PYTHRAN', 1)): import pythran ext = pythran.dist.PythranExtension( 'scipy.linalg._matfuncs_sqrtm_triu', sources=["scipy/linalg/_matfuncs_sqrtm_triu.py"], config=['compiler.blas=none']) config.ext_modules.append(ext) else: config.add_extension('_matfuncs_sqrtm_triu', sources=[('_matfuncs_sqrtm_triu.c')], include_dirs=[get_numpy_include_dirs()]) config.add_data_dir('tests') # Cython BLAS/LAPACK config.add_data_files('cython_blas.pxd') config.add_data_files('cython_lapack.pxd') sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f'] sources += get_g77_abi_wrappers(lapack_opt) includes = numpy_info().get_include_dirs() + [get_python_inc()] config.add_library('fwrappers', sources=sources, include_dirs=includes) config.add_extension('cython_blas', sources=['cython_blas.c'], depends=[ 'cython_blas.pyx', 'cython_blas.pxd', 'fortran_defs.h', '_blas_subroutines.h' ], include_dirs=['.'], libraries=['fwrappers'], extra_info=lapack_opt) config.add_extension('cython_lapack', sources=['cython_lapack.c'], depends=[ 'cython_lapack.pyx', 'cython_lapack.pxd', 'fortran_defs.h', '_lapack_subroutines.h' ], include_dirs=['.'], libraries=['fwrappers'], extra_info=lapack_opt) config.add_extension('_decomp_update', sources=['_decomp_update.c']) config.add_data_files('_cythonized_array_utils.pxd') config.add_extension( '_cythonized_array_utils', sources=['_cythonized_array_utils.c'], depends=['_cythonized_array_utils.pyx', '_cythonized_array_utils.pxd'], include_dirs=['.']) config.add_extension('_matfuncs_expm', sources=['_matfuncs_expm.c']) # Add any license files config.add_data_files('src/id_dist/doc/doc.tex') config.add_data_files('src/lapack_deprecations/LICENSE') # Type stubs config.add_data_files('*.pyi') return config
def configuration(parent_package='', top_path=None): from numpy.distutils.misc_util import Configuration from scipy._build_utils.system_info import get_info from scipy._build_utils import (gfortran_legacy_flag_hook, blas_ilp64_pre_build_hook, combine_dict, uses_blas64, get_f2py_int64_options) from scipy._build_utils.compiler_helper import (set_cxx_flags_clib_hook, set_c_flags_hook) from distutils.sysconfig import get_python_inc config = Configuration('optimize', parent_package, top_path) include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')] minpack_src = [join('minpack', '*f')] config.add_library('minpack', sources=minpack_src) config.add_extension('_minpack', sources=['_minpackmodule.c'], libraries=['minpack'], depends=(["minpack.h", "__minpack.h"] + minpack_src), include_dirs=include_dirs, **numpy_nodepr_api) config.add_library('rectangular_lsap', sources='rectangular_lsap/rectangular_lsap.cpp', headers='rectangular_lsap/rectangular_lsap.h', _pre_build_hook=set_cxx_flags_clib_hook) _lsap = config.add_extension('_lsap', sources=['_lsap.c'], libraries=['rectangular_lsap'], depends=([ 'rectangular_lsap/rectangular_lsap.cpp', 'rectangular_lsap/rectangular_lsap.h' ]), include_dirs=include_dirs, **numpy_nodepr_api) _lsap._pre_build_hook = set_c_flags_hook rootfind_src = [join('Zeros', '*.c')] rootfind_hdr = [join('Zeros', 'zeros.h')] config.add_library('rootfind', sources=rootfind_src, headers=rootfind_hdr, **numpy_nodepr_api) config.add_extension('_zeros', sources=['zeros.c'], libraries=['rootfind'], depends=(rootfind_src + rootfind_hdr), **numpy_nodepr_api) if uses_blas64(): lapack = get_info('lapack_ilp64_opt') f2py_options = get_f2py_int64_options() pre_build_hook = blas_ilp64_pre_build_hook(lapack) else: lapack = get_info('lapack_opt') f2py_options = None pre_build_hook = None lapack = combine_dict(lapack, numpy_nodepr_api) sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f'] ext = config.add_extension( '_lbfgsb', sources=[join('lbfgsb_src', x) for x in sources], f2py_options=f2py_options, **lapack) ext._pre_build_hook = pre_build_hook sources = ['_moduleTNC.c', 'tnc.c'] config.add_extension('_moduleTNC', sources=[join('tnc', x) for x in sources], depends=[join('tnc', 'tnc.h')], **numpy_nodepr_api) config.add_extension('_cobyla', sources=[ join('cobyla', x) for x in ['cobyla.pyf', 'cobyla2.f', 'trstlp.f'] ], **numpy_nodepr_api) sources = ['minpack2.pyf', 'dcsrch.f', 'dcstep.f'] config.add_extension('_minpack2', sources=[join('minpack2', x) for x in sources], **numpy_nodepr_api) sources = ['slsqp.pyf', 'slsqp_optmz.f'] ext = config.add_extension('_slsqp', sources=[join('slsqp', x) for x in sources], **numpy_nodepr_api) ext._pre_build_hook = gfortran_legacy_flag_hook sources = [ join('_direct', x) for x in ('direct_wrap.c', 'DIRect.c', 'DIRsubrout.c', 'DIRserial.c') ] headers = ['_directmodule.h', join('_direct', 'direct-internal.h')] config.add_library('_direct_lib', sources=sources, headers=headers, include_dirs=[get_python_inc()], **numpy_nodepr_api) config.add_extension('_direct', sources=['_directmodule.c'], libraries=['_direct_lib'], depends=(sources + headers), **numpy_nodepr_api) config.add_data_files('__nnls.pyi') ext = config.add_extension( '__nnls', sources=[join('__nnls', x) for x in ["nnls.f", "nnls.pyf"]], **numpy_nodepr_api) ext._pre_build_hook = gfortran_legacy_flag_hook if int(os.environ.get('SCIPY_USE_PYTHRAN', 1)): import pythran ext = pythran.dist.PythranExtension( 'scipy.optimize._group_columns', sources=["scipy/optimize/_group_columns.py"], config=['compiler.blas=none']) config.ext_modules.append(ext) else: config.add_extension( '_group_columns', sources=['_group_columns.c'], ) config.add_extension('_bglu_dense', sources=['_bglu_dense.c']) config.add_subpackage('_lsq') config.add_subpackage('_trlib') config.add_subpackage('_trustregion_constr') # Cython optimize API for zeros functions config.add_subpackage('cython_optimize') config.add_data_files('cython_optimize.pxd') config.add_subpackage('_shgo_lib') config.add_data_dir('_shgo_lib') # HiGHS linear programming libraries and extensions if 'sdist' not in sys.argv: # Avoid running this during sdist creation - it makes numpy.distutils # create an empty cython/src top-level directory. config.add_subpackage('_highs') config.add_data_dir('tests') # Add license files config.add_data_files('lbfgsb_src/README') return config
def configuration(parent_package='', top_path=None): from numpy.distutils.misc_util import Configuration from scipy._build_utils.system_info import get_info from scipy._build_utils import (uses_blas64, blas_ilp64_pre_build_hook, combine_dict, get_f2py_int64_options) config = Configuration('integrate', parent_package, top_path) if uses_blas64(): lapack_opt = get_info('lapack_ilp64_opt', 2) pre_build_hook = blas_ilp64_pre_build_hook(lapack_opt) f2py_options = get_f2py_int64_options() else: lapack_opt = get_info('lapack_opt') pre_build_hook = None f2py_options = None mach_src = [join('mach', '*.f')] quadpack_src = [join('quadpack', '*.f')] lsoda_src = [ join('odepack', fn) for fn in [ 'blkdta000.f', 'bnorm.f', 'cfode.f', 'ewset.f', 'fnorm.f', 'intdy.f', 'lsoda.f', 'prja.f', 'solsy.f', 'srcma.f', 'stoda.f', 'vmnorm.f', 'xerrwv.f', 'xsetf.f', 'xsetun.f' ] ] vode_src = [join('odepack', 'vode.f'), join('odepack', 'zvode.f')] dop_src = [join('dop', '*.f')] config.add_library('mach', sources=mach_src, config_fc={'noopt': (__file__, 1)}, _pre_build_hook=pre_build_hook) config.add_library('quadpack', sources=quadpack_src, _pre_build_hook=pre_build_hook) config.add_library('lsoda', sources=lsoda_src, _pre_build_hook=pre_build_hook) config.add_library('vode', sources=vode_src, _pre_build_hook=pre_build_hook) config.add_library('dop', sources=dop_src, _pre_build_hook=pre_build_hook) # Extensions # quadpack: include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')] cfg = combine_dict(lapack_opt, include_dirs=include_dirs, libraries=['quadpack', 'mach']) config.add_extension('_quadpack', sources=['_quadpackmodule.c'], depends=(['__quadpack.h'] + quadpack_src + mach_src), **cfg) # odepack/lsoda-odeint cfg = combine_dict(lapack_opt, numpy_nodepr_api, libraries=['lsoda', 'mach']) config.add_extension('_odepack', sources=['_odepackmodule.c'], depends=(lsoda_src + mach_src), **cfg) # vode cfg = combine_dict(lapack_opt, libraries=['vode']) ext = config.add_extension('vode', sources=['vode.pyf'], depends=vode_src, f2py_options=f2py_options, **cfg) ext._pre_build_hook = pre_build_hook # lsoda cfg = combine_dict(lapack_opt, libraries=['lsoda', 'mach']) ext = config.add_extension('lsoda', sources=['lsoda.pyf'], depends=(lsoda_src + mach_src), f2py_options=f2py_options, **cfg) ext._pre_build_hook = pre_build_hook # dop ext = config.add_extension('_dop', sources=['dop.pyf'], libraries=['dop'], depends=dop_src, f2py_options=f2py_options) ext._pre_build_hook = pre_build_hook config.add_subpackage('_ivp') return config