def delivery_report(context, case_id, analysis_date, report_path, update):
"""Add delivery report to an existing case."""
adapter = context.obj['adapter']
try:
load_delivery_report(adapter, case_id, analysis_date, report_path,
update)
LOG.info("saved report to case!")
except Exception as e:
LOG.error(e)
context.abort()
def delivery_report(case_id, report_path, update):
"""Add delivery report to an existing case."""
adapter = store
try:
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path, update=update)
LOG.info("saved report to case!")
except Exception as e:
LOG.error(e)
context.abort()
def test_load_delivery_report_bad_case_id(adapter):
## GIVEN no cases in database
assert adapter.case_collection.find_one() is None
## WHEN trying to load a report for a case_id that does not exist in the data base
case_id = 'id_of_non_existing_case'
report_path = 'a_dummy_path'
## THEN an exception should be raised
with pytest.raises(DataNotFoundError):
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path)
def delivery_report(context, case_id, report_path,
update):
"""Add delivery report to an existing case."""
adapter = context.obj['adapter']
try:
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path, update=update)
LOG.info("saved report to case!")
except Exception as e:
LOG.error(e)
context.abort()
def test_load_delivery_report_bad_case_id(panel_database):
adapter = panel_database
# GIVEN no cases in database
assert adapter.cases().count() == 0
# WHEN trying to load a report for a case_id that does not exist in the data base
case_id = 'id_of_non_existing_case'
report_path = 'a_dummy_path'
# THEN an exception should be raised
with pytest.raises(DataNotFoundError):
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path)
def test_load_delivery_report_bad_case_id(panel_database):
adapter = panel_database
# GIVEN no cases in database
assert adapter.cases().count() == 0
# WHEN trying to load a report for a case_id that does not exist in the data base
case_id = 'id_of_non_existing_case'
report_path = 'a_dummy_path'
# THEN an exception should be raised
with pytest.raises(DataNotFoundError):
load_delivery_report(adapter=adapter,
case_id=case_id,
report_path=report_path)
def test_load_delivery_report_using_case_id_with_update_success(adapter, case_obj):
adapter.case_collection.insert_one(case_obj)
## GIVEN a case exist, with a delivery report
case_obj = adapter.case_collection.find_one()
assert case_obj.get('delivery_report')
## WHEN trying to load a report for a case_id that does exist in the data base
case_id = case_obj['_id']
report_path = 'report_test_path'
update = True
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path, update=update)
# THEN a report should have been added to that case
updated_case_obj = adapter.case_collection.find_one()
assert updated_case_obj['delivery_report'] == report_path
def test_load_delivery_report_using_case_id_without_update_fail(adapter, case_obj):
adapter.case_collection.insert_one(case_obj)
## GIVEN a case exist, with a delivery report
case_obj = adapter.case_collection.find_one()
assert case_obj.get('delivery_report')
## WHEN trying to load a report for a case_id that does exist in the data base without update
# flag
case_id = case_obj['_id']
report_path2 = 'report_test_path2'
## THEN a report should not have been added to that case
with pytest.raises(IntegrityError):
load_delivery_report(adapter=adapter, case_id=case_id, report_path=report_path2)
updated_case_obj = adapter.case_collection.find_one()
assert updated_case_obj.get('delivery_report') != report_path2
def test_load_delivery_report_using_case_id_with_update_success(case_database):
adapter = case_database
# GIVEN a case exist, without a delivery report for the given analysis date
assert adapter.cases().count() > 0
case_obj = adapter.cases()[0]
assert case_obj.get('delivery_report')
# WHEN trying to load a report for a case_id that does exist in the data base
case_id = case_obj['_id']
report_path = 'report_test_path'
update = True
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path, update=update)
# THEN a report should have been added to that case
updated_case_obj = adapter.cases()[0]
assert updated_case_obj['delivery_report'] == report_path
def test_load_delivery_report_using_case_id_without_update_fail(case_database):
adapter = case_database
# GIVEN a case exist, with a delivery report
assert adapter.cases().count() > 0
case_obj = adapter.cases()[0]
assert case_obj.get('delivery_report')
# WHEN trying to load a report for a case_id that does exist in the data base without update
# flag
case_id = case_obj['_id']
report_path2 = 'report_test_path2'
# THEN a report should not have been added to that case
with pytest.raises(IntegrityError):
load_delivery_report(adapter=adapter, case_id=case_id,
report_path=report_path2)
updated_case_obj = adapter.cases()[0]
assert updated_case_obj.get('delivery_report') != report_path2
def test_load_delivery_report_using_case_id_with_update_success(case_database):
adapter = case_database
# GIVEN a case exist, without a delivery report for the given analysis date
assert adapter.cases().count() > 0
case_obj = adapter.cases()[0]
assert case_obj.get('delivery_report')
# WHEN trying to load a report for a case_id that does exist in the data base
case_id = case_obj['_id']
report_path = 'report_test_path'
update = True
load_delivery_report(adapter=adapter,
case_id=case_id,
report_path=report_path,
update=update)
# THEN a report should have been added to that case
updated_case_obj = adapter.cases()[0]
assert updated_case_obj['delivery_report'] == report_path
def test_load_delivery_report_using_case_id_without_update_fail(case_database):
adapter = case_database
# GIVEN a case exist, with a delivery report
assert adapter.cases().count() > 0
case_obj = adapter.cases()[0]
assert case_obj.get('delivery_report')
# WHEN trying to load a report for a case_id that does exist in the data base without update
# flag
case_id = case_obj['_id']
report_path2 = 'report_test_path2'
# THEN a report should not have been added to that case
with pytest.raises(IntegrityError):
load_delivery_report(adapter=adapter,
case_id=case_id,
report_path=report_path2)
updated_case_obj = adapter.cases()[0]
assert updated_case_obj.get('delivery_report') != report_path2
def upload_delivery_report(self, report_path: str, case_id: str, update: bool = False):
""" Load a delivery report into a case in the database
If the report already exists the function will exit.
If the user want to load a report that is already in the database
'update' has to be 'True'
Args:
report_path (string): Path to delivery report
case_id (string): Case identifier
update (bool): If an existing report should be replaced
Returns:
updated_case(dict)
"""
return load_delivery_report(
adapter=self, case_id=case_id, report_path=report_path, update=update
)