def delete_event(self, event_id):
"""Delete a event
Arguments:
event_id (str): The database key for the event
"""
logger.info("Deleting event{0}".format(event_id))
Event.objects(id=event_id).delete()
logger.debug("Event {0} deleted".format(event_id))
def delete_event(self, event_id):
"""
Delete a event
Arguments:
event_id (str): The database key for the event
"""
self.logger.info("Deleting event{0}".format(
event_id
))
Event.objects(id=event_id).delete()
self.logger.debug("Event {0} deleted".format(
event_id
))
def has_comments(self):
"""
Return True is there are any comments for this variant in the database
"""
if Event.objects(verb='comment', variant_id=self.variant_id,
institute=self.institute):
return True
return False
def has_comments(self):
"""
Return True is there are any comments for this variant in the database
"""
if Event.objects(verb='comment',
variant_id=self.variant_id,
institute=self.institute):
return True
return False
def test_add_mim(setup_database, get_institute, get_user, get_case):
logger.info("Add OMIM term for a case")
# Non existing mim phenotype
mim_term = "MIM:614300"
setup_database.add_phenotype(
institute=get_institute, case=get_case, user=get_user, link="mimlink", omim_term=mim_term
)
# Assert that the synopsis has been added to the case
updated_case = Case.objects.get(case_id="acase")
assert len(updated_case.phenotype_terms) != 0
# Check that the event not exists
for event in Event.objects(verb="add_phenotype"):
assert event.link == "mimlink"
event.delete()
