def test_run(self):
pwm_dir = pkg_resources.resource_filename("seekr", "tests/data/pwms/")
counts = pkg_resources.resource_filename(
"seekr", "tests/data/example_2mers.npy")
cw = CountsWeighter(pwm_dir, counts, k=2)
cw.run()
expected = np.array(
[[4.56194883, 5.65991574, 6.5880013, 6.47169944, 8.14747599]])
assert np.allclose(cw.df.values, expected)
def _run_pwms(pwm_dir, counts, kmer, out_path):
# TODO (Dan) name this function
# Note: This function is separated for testing purposes.
counts_weighter = CountsWeighter(pwm_dir, counts, kmer, out_path)
counts_weighter.run()