def control_panel(self, tables):
self.widgets.motion_chart.guess_or_remember(('multicompare motionchart', tables), None)
self._add_select(
'reduce_method',
'Dimensionality reduction method',
options=[
('pca', 'PCA over averaged reduce_dimensions1'),
('ks', 'Distances are ks-score between histogram of reduce_dimensions1'),
('average', 'Averages over reduce dimensions 1 and 2)')],
is_multiple=False,
cache_key=None,
default=['pca'])
self._add_select(
'reduce_dims1',
'Dimensionality reduction dims 1',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'reduce_dims2',
'Dimensionality reduction dims 2',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'average_dims',
'Calculate average for',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'std_dims',
'Calculate std for',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'id_tags',
'Id tags',
options=tables[0].tags.keys(),
cache_key=tables,
default=['name'])
self._add_select(
'scroll_tags',
'Animation Scroll tags',
options=tables[0].tags.keys(),
cache_key=tables,
default=[])
def control_panel(self, tables):
self.widgets.motion_chart.guess_or_remember(
('multicompare motionchart', tables), None)
self._add_select(
'reduce_method',
'Dimensionality reduction method',
options=[
('pca', 'PCA over averaged reduce_dimensions1'),
('ks',
'Distances are ks-score between histogram of reduce_dimensions1'
), ('average', 'Averages over reduce dimensions 1 and 2)')
],
is_multiple=False,
cache_key=None,
default=['pca'])
self._add_select('reduce_dims1',
'Dimensionality reduction dims 1',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select('reduce_dims2',
'Dimensionality reduction dims 2',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select('average_dims',
'Calculate average for',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select('std_dims',
'Calculate std for',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select('id_tags',
'Id tags',
options=tables[0].tags.keys(),
cache_key=tables,
default=['name'])
self._add_select('scroll_tags',
'Animation Scroll tags',
options=tables[0].tags.keys(),
cache_key=tables,
default=[])
def control_panel(self, tables):
self._add_select(
'window_dim',
'Sliding window dimension',
options=options_from_table(tables[0]),
is_multiple=False,
cache_key=tables,
default=['Time'])
self._add_input(
'size',
'Sliding window size',
cache_key=tables,
default=1000)
self._add_input(
'overlap',
'Sliding window overlap',
cache_key=tables,
default=500)
self._add_select(
'agg_method',
'From every window take',
options=[('average', 'Average'), ('median', 'Median')],
is_multiple=False)
def control_panel(self, tables):
self._add_select(
'tables_to_show',
'Tables to Show',
options=[('all', 'All tables')] + [(t.name, t.name) for t in tables],
is_multiple=True,
cache_key=tables,
default=['all'])
self._add_select(
'dims',
'Dimensions to correlate',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'corr_method',
'Correlation method',
options=[('corr', 'Correlation'), ('mi', 'Mutual Information')],
is_multiple=False,
cache_key=tables,
default=['corr'])
def control_panel(self, tables):
self._add_select('dims',
'Dimensions for box plot',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
def control_panel(self, tables):
self._add_select(
'dims',
'Dimensions to divide',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'ratio_dim',
'Divider dimension',
options=options_from_table(tables[0]),
is_multiple=False,
cache_key=tables,
default=[])
def control_panel(self, tables):
self._add_select(
'dims',
'Dimensions for box plot',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
def control_panel(self, tables):
self._add_select('cluster_dims',
'Clustering Dimensions',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
return self._control_panel(tables)
def control_panel(self, tables):
self._add_select(
'cluster_dims',
'Clustering Dimensions',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
return self._control_panel(tables)
def control_panel(self, tables):
self._add_select(
'dims',
'Dimensions to discretize',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'bin_type',
'Bin Method',
options=[('divide', 'Divide the range [min,max] equally to the spcified number of bins'), ('explicit', 'Use a comma separated list of bins')],
is_multiple=False,
cache_key=tables,
default=['divide'])
self._add_input(
'bins',
'Bins',
cache_key=tables,
default='2',
numeric_validation=False)
def control_panel(self, tables):
self._add_select('window_dim',
'Sliding window dimension',
options=options_from_table(tables[0]),
is_multiple=False,
cache_key=tables,
default=['Time'])
self._add_input('size',
'Sliding window size',
cache_key=tables,
default=1000)
self._add_input('overlap',
'Sliding window overlap',
cache_key=tables,
default=500)
self._add_select('agg_method',
'From every window take',
options=[('average', 'Average'),
('median', 'Median')],
is_multiple=False)
def control_panel(self, tables):
AbstractPlot.control_panel(self, tables)
self._add_select(
'contour',
'Draw Contour Lines',
options=[('none', 'None'), ('regular', 'Regular Contour'), ('smooth', 'Smooth Contour')],
is_multiple=False,
cache_key=tables,
default=['none'])
self._add_select(
'color',
'Color',
options=[('None', [('none', 'No Color')])] + options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=['none'])
if not self.widgets.color.values.choices:
self.widgets.color.values.choices = ['None']
self._add_select(
'resolution',
'Resolution',
options=['1', '1.25', '1.5', '2', '3', '4'],
is_multiple=False,
cache_key=tables,
default=['1'])
self._add_input(
'min_cells_in_bin',
'Minimum cells in a bin',
cache_key=tables,
default='1')
if self.widgets.min_cells_in_bin.values.value == None:
self.widgets.min_cells_in_bin.values.value = 1
def control_panel(self, tables):
AbstractPlot.control_panel(self, tables)
self._add_select('contour',
'Draw Contour Lines',
options=[('none', 'None'),
('regular', 'Regular Contour'),
('smooth', 'Smooth Contour')],
is_multiple=False,
cache_key=tables,
default=['none'])
self._add_select('color',
'Color',
options=[('None', [('none', 'No Color')])] +
options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=['none'])
if not self.widgets.color.values.choices:
self.widgets.color.values.choices = ['None']
self._add_select('resolution',
'Resolution',
options=['1', '1.25', '1.5', '2', '3', '4'],
is_multiple=False,
cache_key=tables,
default=['1'])
self._add_input('min_cells_in_bin',
'Minimum cells in a bin',
cache_key=tables,
default='1')
if self.widgets.min_cells_in_bin.values.value == None:
self.widgets.min_cells_in_bin.values.value = 1
def control_panel(self, tables):
self._add_select('dims',
'Dimensions to discretize',
options=options_from_table(tables[0]),
is_multiple=True,
cache_key=tables,
default=[])
self._add_select(
'bin_type',
'Bin Method',
options=
[('divide',
'Divide the range [min,max] equally to the spcified number of bins'
), ('explicit', 'Use a comma separated list of bins')],
is_multiple=False,
cache_key=tables,
default=['divide'])
self._add_input('bins',
'Bins',
cache_key=tables,
default='2',
numeric_validation=False)
def view(self, tables):
""" The view method of this module draws the control panel and the histograms.
We need at least one input to be able to draw something.
"""
if not tables:
return View(self, 'No tables to show.')
self.widgets.color.guess_or_remember(('histogram text', tables),
['name'])
self.widgets.text.guess_or_remember(('histogram colors', tables),
['name'])
self.widgets.shift.guess_or_remember(('histogram shift', tables),
'0.2')
self.widgets.sort_inside.guess_or_remember(
('histogram sort inside', tables), ['similarity'])
self.widgets.sort_outside.guess_or_remember(
('histogram sort outside', tables), ['sort'])
self.widgets.trim.guess_or_remember(('histogram trim', tables), ['no'])
self.widgets.trim_thresh.guess_or_remember(
('histogram trim thresh', tables), '0')
sort_inside_options = [('unsort', 'Keep original order'),
('similarity', 'Put similar curves together')]
sort_inside_options += [(x, 'Sort by %s' % x)
for x in tables[0].tags.keys()]
# Create the control panel view. This will enable users to choose the dimensions.
control_panel_view = stack_lines(
self.widgets.dims.view('Dimension', self.widgets.apply,
options_from_table(tables[0])),
self.widgets.text.view('Text by', self.widgets.apply,
tables[0].tags.keys()),
self.widgets.color.view('Color by', self.widgets.apply,
tables[0].tags.keys()),
self.widgets.shift.view('Shift for multiple curves',
self.widgets.apply),
self.widgets.sort_inside.view('Curve sorting',
self.widgets.apply,
sort_inside_options,
multiple=False),
self.widgets.sort_outside.view(
'Plot sorting',
self.widgets.apply,
[('sort', 'Put plots with many differences first'),
('unsort', 'Keep original order')],
multiple=False),
self.widgets.trim.view(
'Trim plots',
self.widgets.apply,
[('yes', 'Convert values lower than threshold to 0'),
('no', 'Don\'t trim')],
multiple=False),
self.widgets.trim_thresh.view('Trim threshold',
self.widgets.apply),
self.widgets.apply.view())
main_views = []
shift = self.widgets.shift.value_as_float()
plots_for_legend = OrderedDict()
colorer = axes.Colorer()
# Check that the user has already chosen dimensions. Otherwise, ask him
# to do so.
if self.widgets.dims.values.choices:
timer = MultiTimer(len(self.widgets.dims.values.choices))
for i, dim in enumerate(self.widgets.dims.values.choices):
try:
# Go over every dimension and create the histogram:
# First create a new figure:
fig = self.create_and_adjust_figure(tables)
ax = fig.add_subplot(111)
# Draw the histogram for every input
plots = []
sorted_tables = tables
sort_method = self.widgets.sort_inside.values.choices[0]
if sort_method == 'unsort':
sorted_tables = tables
elif sort_method == 'similarity':
thresh = None
if self.widgets.trim.get_choices()[0] == 'yes':
thresh = self.widgets.trim_thresh.value_as_float()
# get distances table:
distances = datatable.ks_distances(tables, dim, thresh)
# sort by distance
sorted_tables = greedy_distance_sort(distances, tables)
else:
# we need to sort by tags:
tag_for_sort = self.widgets.sort_inside.values.choices[
0]
sorted_tables = sorted(
tables, key=lambda table: table.tags[tag_for_sort])
for i, table in enumerate(sorted_tables):
color_tags = self.widgets.color.values.choices
color_key = tuple([table.tags[c] for c in color_tags])
min_x = None
if self.widgets.trim.get_choices()[0] == 'yes':
min_x = self.widgets.trim_thresh.value_as_float()
plot = axes.kde1d(ax,
table,
dim,
color=colorer.get_color(color_key),
min_x=min_x,
shift=shift * i)
plots_for_legend[color_key] = plot
# Add ticks with table names:
if self.widgets.shift.value_as_float() > 0:
ax.set_yticks(np.arange(0, len(tables) * shift, shift))
ax.set_yticklabels([
t.get_tags(self.widgets.text.values.choices)
for t in sorted_tables
],
size='xx-small')
# set axes y range:
ax.set_ylim(bottom=-0.1,
top=0.8 + shift * (len(sorted_tables) - 1))
# Make sure we don't create the same widget twice. We create a new widget
# for every dimension asked.
widget_key = self._normalize_id(dim)
if not widget_key in self.widgets:
self._add_widget(widget_key, Figure)
figure_widget = self.widgets[widget_key]
if len(tables) > 1:
from scipy.stats import ks_2samp
ks, p_ks = ks_2samp(tables[0].get_cols(dim)[0],
tables[1].get_cols(dim)[0])
ks_view = View(self,
'ks: %.3f, p_ks: %.10f' % (ks, p_ks))
final_view = stack_lines(ks_view,
figure_widget.view(fig))
else:
ks, p_ks = 0, 0
final_view = figure_widget.view(fig)
# Add the new widget's view
main_views.append((ks, p_ks, final_view))
except Exception as e:
logging.exception('Exception when drawing histogram')
main_views.append((0, 0, View(self, str(e))))
timer.complete_task(dim)
# sort by the ks test:
main_views = sorted(main_views, key=itemgetter(0), reverse=True)
main_views = [v[2] for v in main_views]
# create legend:
legened_titles = plots_for_legend.keys()
print len(legened_titles)
max_title_len = max([len(str(t)) for t in legened_titles] + [0])
print max_title_len
WIDTH_PER_LETTER = 7
EXTRA_WIDTH = 60
HEIGHT_PER_LINE = 30
EXTRA_HEIGHT = 50
MIN_X = 300
MIN_Y = 100
legend_x = max(MIN_X,
EXTRA_WIDTH + WIDTH_PER_LETTER * max_title_len)
legend_y = max(
MIN_Y, EXTRA_HEIGHT + HEIGHT_PER_LINE * len(legened_titles))
fig = axes.new_figure(legend_x, legend_y)
ax = fig.add_subplot(111)
ax.get_xaxis().set_visible(False)
ax.get_yaxis().set_visible(False)
ax.legend(plots_for_legend.values(),
plots_for_legend.keys(),
loc='center',
mode='expand',
frameon=False,
prop={'size': 'xx-small'})
main_views = [self.widgets.legend_figure.view(fig)] + main_views
main_view = view.stack_left(*main_views)
else:
main_view = View(None, 'Please select dimensions')
# combine the control panel and the main view togeteher:
return self.widgets.layout.view(main_view, control_panel_view)
def view(self, tables):
""" The view method of this module draws the control panel and the histograms.
We need at least one input to be able to draw something.
"""
if not tables:
return View(self, 'No tables to show.')
self.widgets.color.guess_or_remember(('histogram text', tables), ['name'])
self.widgets.text.guess_or_remember(('histogram colors', tables), ['name'])
self.widgets.shift.guess_or_remember(('histogram shift', tables), '0.2')
self.widgets.sort_inside.guess_or_remember(('histogram sort inside', tables), ['similarity'])
self.widgets.sort_outside.guess_or_remember(('histogram sort outside', tables), ['sort'])
self.widgets.trim.guess_or_remember(('histogram trim', tables), ['no'])
self.widgets.trim_thresh.guess_or_remember(('histogram trim thresh', tables), '0')
sort_inside_options = [('unsort', 'Keep original order'), ('similarity', 'Put similar curves together')]
sort_inside_options += [(x, 'Sort by %s' % x) for x in tables[0].tags.keys()]
# Create the control panel view. This will enable users to choose the dimensions.
control_panel_view = stack_lines(
self.widgets.dims.view('Dimension', self.widgets.apply, options_from_table(tables[0])),
self.widgets.text.view('Text by', self.widgets.apply, tables[0].tags.keys()),
self.widgets.color.view('Color by', self.widgets.apply, tables[0].tags.keys()),
self.widgets.shift.view('Shift for multiple curves', self.widgets.apply),
self.widgets.sort_inside.view('Curve sorting', self.widgets.apply,
sort_inside_options,
multiple=False),
self.widgets.sort_outside.view('Plot sorting', self.widgets.apply,
[('sort', 'Put plots with many differences first'), ('unsort', 'Keep original order')],
multiple=False),
self.widgets.trim.view('Trim plots', self.widgets.apply,
[('yes', 'Convert values lower than threshold to 0'), ('no', 'Don\'t trim')], multiple=False),
self.widgets.trim_thresh.view('Trim threshold', self.widgets.apply),
self.widgets.apply.view())
main_views = []
shift = self.widgets.shift.value_as_float()
plots_for_legend = OrderedDict()
colorer = axes.Colorer()
# Check that the user has already chosen dimensions. Otherwise, ask him
# to do so.
if self.widgets.dims.values.choices:
timer = MultiTimer(len(self.widgets.dims.values.choices))
for i, dim in enumerate(self.widgets.dims.values.choices):
try:
# Go over every dimension and create the histogram:
# First create a new figure:
fig = self.create_and_adjust_figure(tables)
ax = fig.add_subplot(111)
# Draw the histogram for every input
plots = []
sorted_tables = tables
sort_method = self.widgets.sort_inside.values.choices[0]
if sort_method == 'unsort':
sorted_tables = tables
elif sort_method == 'similarity':
thresh = None
if self.widgets.trim.get_choices()[0] == 'yes':
thresh = self.widgets.trim_thresh.value_as_float()
# get distances table:
distances = datatable.ks_distances(tables, dim, thresh)
# sort by distance
sorted_tables = greedy_distance_sort(distances, tables)
else:
# we need to sort by tags:
tag_for_sort = self.widgets.sort_inside.values.choices[0]
sorted_tables = sorted(tables, key=lambda table: table.tags[tag_for_sort])
for i, table in enumerate(sorted_tables):
color_tags = self.widgets.color.values.choices
color_key = tuple([table.tags[c] for c in color_tags])
min_x = None
if self.widgets.trim.get_choices()[0] =='yes':
min_x = self.widgets.trim_thresh.value_as_float()
plot = axes.kde1d(ax, table, dim,
color=colorer.get_color(color_key),
min_x=min_x,
shift=shift*i)
plots_for_legend[color_key] = plot
# Add ticks with table names:
if self.widgets.shift.value_as_float() > 0:
ax.set_yticks(np.arange(0, len(tables)*shift, shift))
ax.set_yticklabels([t.get_tags(self.widgets.text.values.choices) for t in sorted_tables], size='xx-small')
# set axes y range:
ax.set_ylim(bottom = -0.1, top=0.8+shift*(len(sorted_tables)-1))
# Make sure we don't create the same widget twice. We create a new widget
# for every dimension asked.
widget_key = self._normalize_id(dim)
if not widget_key in self.widgets:
self._add_widget(widget_key, Figure)
figure_widget = self.widgets[widget_key]
if len(tables) > 1:
from scipy.stats import ks_2samp
ks, p_ks = ks_2samp(tables[0].get_cols(dim)[0], tables[1].get_cols(dim)[0])
ks_view = View(self, 'ks: %.3f, p_ks: %.10f' % (ks, p_ks))
final_view = stack_lines(ks_view, figure_widget.view(fig))
else:
ks, p_ks = 0, 0
final_view = figure_widget.view(fig)
# Add the new widget's view
main_views.append((ks, p_ks, final_view))
except Exception as e:
logging.exception('Exception when drawing histogram')
main_views.append((0, 0, View(self, str(e))))
timer.complete_task(dim)
# sort by the ks test:
main_views = sorted(main_views, key=itemgetter(0), reverse=True)
main_views = [v[2] for v in main_views]
# create legend:
legened_titles = plots_for_legend.keys()
print len(legened_titles)
max_title_len = max([len(str(t)) for t in legened_titles] + [0])
print max_title_len
WIDTH_PER_LETTER = 7
EXTRA_WIDTH = 60
HEIGHT_PER_LINE = 30
EXTRA_HEIGHT = 50
MIN_X = 300
MIN_Y = 100
legend_x = max(MIN_X, EXTRA_WIDTH + WIDTH_PER_LETTER * max_title_len)
legend_y = max(MIN_Y, EXTRA_HEIGHT + HEIGHT_PER_LINE * len(legened_titles))
fig = axes.new_figure(legend_x, legend_y)
ax = fig.add_subplot(111)
ax.get_xaxis().set_visible(False)
ax.get_yaxis().set_visible(False)
ax.legend(plots_for_legend.values(),
plots_for_legend.keys(),
loc='center',
mode='expand',
frameon=False,
prop={'size' : 'xx-small'})
main_views = [self.widgets.legend_figure.view(fig)] + main_views
main_view = view.stack_left(*main_views)
else:
main_view = View(None, 'Please select dimensions')
# combine the control panel and the main view togeteher:
return self.widgets.layout.view(main_view, control_panel_view)
def control_panel(self, tables):
self._add_select('dim_x',
'X Axis',
options=options_from_table(tables[0]),
is_multiple=not self.enable_gating,
cache_key=tables,
default=[tables[0].dims[0]])
self._add_select('dim_y',
'Y Axis',
options=options_from_table(tables[0]),
is_multiple=not self.enable_gating,
cache_key=tables,
default=[tables[0].dims[1]])
self._add_select('tables_to_show',
'Tables to Show',
options=[('all', 'All tables')] + [(t.name, t.name)
for t in tables],
is_multiple=True,
cache_key=tables,
default=['all'])
self._begin_section('View Area')
self._add_input('min_x',
'Min X',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'),
('Fit for row plots', 'common')])
self._add_input('min_y',
'Min Y',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'),
('Fit for row plots', 'common')])
self._add_input('max_x',
'Max X',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'),
('Fit for row plots', 'common')])
self._add_input('max_y',
'Max Y',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'),
('Fit for row plots', 'common')])
self._end_section('View Area', False)
if self.enable_gating:
# we need to save ids for the gate inputs, so that the areaselect in the view function
# can reference them.
self.gate_min_x_id = 'min_x_%s' % self._get_unique_id()
self.gate_max_x_id = 'max_x_%s' % self._get_unique_id()
self.gate_min_y_id = 'min_y_%s' % self._get_unique_id()
self.gate_max_y_id = 'max_y_%s' % self._get_unique_id()
# we need the max/min values for the predefined values on the gate input.
dim_x = self.widgets.dim_x.get_choice()
dim_y = self.widgets.dim_y.get_choice()
min_x = 0
min_y = 0
max_x = 0
max_y = 0
if dim_x:
min_x = tables[0].min(dim_x)
max_x = tables[0].max(dim_x)
if dim_y:
min_y = tables[0].min(dim_y)
max_y = tables[0].max(dim_y)
self._begin_section('Gate')
self._add_input('gate_min_x',
'Gate Min X',
id=self.gate_min_x_id,
cache_key=tables,
default='%.2f' % min_x,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Minimum', '%.2f' % min_x)])
self._add_input('gate_min_y',
'Gate Min Y',
id=self.gate_min_y_id,
cache_key=tables,
default='%.2f' % min_y,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Minimum', '%.2f' % min_y)])
self._add_input('gate_max_x',
'Gate Max X',
id=self.gate_max_x_id,
cache_key=tables,
default='%.2f' % max_x,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Maximum', '%.2f' % max_x)])
self._add_input('gate_max_y',
'Gate Max Y',
id=self.gate_max_y_id,
cache_key=tables,
default='%.2f' % max_y,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Maximum', '%.2f' % max_y)])
self._end_section('Gate', False)
def control_panel(self, tables):
self._add_select(
'dim_x',
'X Axis',
options=options_from_table(tables[0]),
is_multiple=not self.enable_gating,
cache_key=tables,
default=[tables[0].dims[0]])
self._add_select(
'dim_y',
'Y Axis',
options=options_from_table(tables[0]),
is_multiple=not self.enable_gating,
cache_key=tables,
default=[tables[0].dims[1]])
self._add_select(
'tables_to_show',
'Tables to Show',
options=[('all', 'All tables')] + [(t.name, t.name) for t in tables],
is_multiple=True,
cache_key=tables,
default=['all'])
self._begin_section('View Area')
self._add_input(
'min_x',
'Min X',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'), ('Fit for row plots', 'common')])
self._add_input(
'min_y',
'Min Y',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'), ('Fit for row plots', 'common')])
self._add_input(
'max_x',
'Max X',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'), ('Fit for row plots', 'common')])
self._add_input(
'max_y',
'Max Y',
cache_key=tables,
default='common',
numeric_validation=False,
non_empty_validation=False,
size=8,
predefined_values=[('Fit per plot', 'auto'), ('Fit for row plots', 'common')])
self._end_section('View Area', False)
if self.enable_gating:
# we need to save ids for the gate inputs, so that the areaselect in the view function
# can reference them.
self.gate_min_x_id = 'min_x_%s' % self._get_unique_id()
self.gate_max_x_id = 'max_x_%s' % self._get_unique_id()
self.gate_min_y_id = 'min_y_%s' % self._get_unique_id()
self.gate_max_y_id = 'max_y_%s' % self._get_unique_id()
# we need the max/min values for the predefined values on the gate input.
dim_x = self.widgets.dim_x.get_choice()
dim_y = self.widgets.dim_y.get_choice()
min_x=0; min_y=0; max_x=0; max_y=0;
if dim_x:
min_x = tables[0].min(dim_x)
max_x = tables[0].max(dim_x)
if dim_y:
min_y = tables[0].min(dim_y)
max_y = tables[0].max(dim_y)
self._begin_section('Gate')
self._add_input(
'gate_min_x',
'Gate Min X',
id=self.gate_min_x_id,
cache_key=tables,
default='%.2f' % min_x,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Minimum', '%.2f' % min_x)])
self._add_input(
'gate_min_y',
'Gate Min Y',
id=self.gate_min_y_id,
cache_key=tables,
default='%.2f' % min_y,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Minimum', '%.2f' % min_y)])
self._add_input(
'gate_max_x',
'Gate Max X',
id=self.gate_max_x_id,
cache_key=tables,
default='%.2f' % max_x,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Maximum', '%.2f' % max_x)])
self._add_input(
'gate_max_y',
'Gate Max Y',
id=self.gate_max_y_id,
cache_key=tables,
default='%.2f' % max_y,
numeric_validation=False,
non_empty_validation=False,
predefined_values=[('Maximum', '%.2f' % max_y)])
self._end_section('Gate', False)
