def get_wikipedia_link_graph_sparse_csc(self):
filename = FileLocations.get_dropbox_wikipedia_path(
) + 'wikipedia_link_graph_sparse_csc.deduped.15910478.pickle'
self.logger.info('Loading %s', filename)
with open(filename, 'rb') as handle:
self.wikipedia_link_graph_sparse_csc = pickle.load(handle)
self.logger.info('Loaded %s', filename)
return self.wikipedia_link_graph_sparse_csc
def load_wikititle_id_by_id(self, filename=None):
if self.wikititle_id_by_id is None:
if filename is None:
filename = FileLocations.get_dropbox_wikipedia_path(
) + 'wikititle_id_by_id.case_insensitive.15910478.pickle'
self.logger.info('Loading %s', filename)
with open(filename, 'rb') as handle:
self.wikititle_id_by_id = pickle.load(handle)
self.logger.info('Loaded %s', filename)
def load_wikipeadia_link_graph(self, link_graph_filename=None):
if self.wikipedia_link_graph_sparse is None:
if link_graph_filename is None:
link_graph_filename = FileLocations.get_dropbox_wikipedia_path(
) + 'wikipedia_link_graph_sparse.deduped.15910478.pickle'
if os.path.isfile(link_graph_filename):
self.logger.info('loading wikipedia_link_graph_sparse from %s',
link_graph_filename)
with open(link_graph_filename, 'rb') as handle:
self.wikipedia_link_graph_sparse = pickle.load(handle)
self.logger.info('loaded')
def convert_link_graph_to_csr_and_csc(self):
self.load_wikipeadia_link_graph()
self.logger.info('converting to csr')
csr = self.wikipedia_link_graph_sparse.tocsr()
self.logger.info('converting to csc')
csc = self.wikipedia_link_graph_sparse.tocsc()
output_filename = FileLocations.get_dropbox_wikipedia_path(
) + 'wikipedia_link_graph_sparse_csr.deduped.15910478.pickle'
self.logger.info('About to write %s', output_filename)
with open(output_filename, 'wb') as handle:
pickle.dump(csr, handle, protocol=pickle.HIGHEST_PROTOCOL)
self.logger.info('file written = %s', output_filename)
output_filename = FileLocations.get_dropbox_wikipedia_path(
) + 'wikipedia_link_graph_sparse_csc.deduped.15910478.pickle'
self.logger.info('About to write %s', output_filename)
with open(output_filename, 'wb') as handle:
pickle.dump(csc, handle, protocol=pickle.HIGHEST_PROTOCOL)
self.logger.info('file written = %s', output_filename)
def extract_graph_from_compressed(self, wikititle_to_id_filename=None):
self.logger.warning('running extract_graph_from_compressed().')
self.logger.warning(
'[this takes about 2hr 20 min on Dwane\'s home machine]')
input_file = gzip.open(FileLocations.get_dropbox_wikipedia_path() +
'wikipedia-dump.json.gz',
'rt',
encoding='utf-8')
if wikititle_to_id_filename is not None:
fn = wikititle_to_id_filename
else:
fn = FileLocations.get_dropbox_wikipedia_path(
) + 'wikititle_marisa_trie.case_insensitive.15910478.pickle'
self.logger.warning(
' %s needs to be complete for these results to make most sense',
fn)
self.get_wikititle_case_insensitive_marisa_trie()
count = 0
line = '{}'
from_list = []
to_list = []
value_list = []
max_id = 0
while count < 25000000 and line is not None and line != '':
count += 1
early_log = count <= 50000 and count % 10000 == 0
late_log = count > 50000 and count % 1000000 == 0
if early_log or late_log:
self.logger.info('%d lines processed', count)
output_filename = FileLocations.get_temp_path(
) + 'wikipedia_link_graph_sparse.deduped.' + str(
count) + '.pickle'
self.logger.info('saving file %s', output_filename)
row = np.array(from_list)
col = np.array(to_list)
data = np.array(value_list)
mtx = sparse.coo_matrix((data, (row, col)),
shape=(max_id + 1, max_id + 1))
self.logger.info('About to write %s', output_filename)
with open(output_filename, 'wb') as handle:
pickle.dump(mtx, handle, protocol=pickle.HIGHEST_PROTOCOL)
self.logger.info('file written = %s', output_filename)
line = input_file.readline()
if line != '':
try:
data = json.loads(line)
except json.decoder.JSONDecodeError as e:
self.logger.warning(
"type error decoding json: json = %s, error = %s",
line, str(e))
break
# pprint.pprint(data)
if 'links' in data:
fid = data['wid']
if self.get_wikititle_id_from_id(fid)[0][0] != fid:
self.logger.info(
'%s -> %s ', fid,
self.get_wikititle_id_from_id(fid)[0][0])
fid = self.get_wikititle_id_from_id(fid)[0][0]
if fid > max_id:
max_id = fid
for link in data['links']:
link_name = link[
'id'] # this is not numeric, has underscores, matches WikiTitle
if link_name in self.wikititle_marisa_trie:
link_list = self.wikititle_marisa_trie[link_name]
link_cid = link_list[0][0]
if link_cid > max_id:
max_id = link_cid
# d['type'] = link['type'] # do we care about link type? assuming no
from_list.append(fid)
to_list.append(link_cid)
value_list.append(1)
self.logger.info('%d lines processed', count)
output_filename = FileLocations.get_temp_path(
) + 'wikipedia_link_graph_sparse.deduped.' + str(count) + '.pickle'
self.logger.info('saving file %s', output_filename)
row = np.array(from_list)
col = np.array(to_list)
data = np.array(value_list)
mtx = sparse.coo_matrix((data, (row, col)), shape=(max_id, max_id))
self.logger.info('About to write %s', output_filename)
with open(output_filename, 'wb') as handle:
pickle.dump(mtx, handle, protocol=pickle.HIGHEST_PROTOCOL)
self.logger.info('file written = %s', output_filename)
def get_dexter_dataset(self, path=None, filename='short.json'):
if path is None:
path = FileLocations.get_dropbox_wikipedia_path()
with open(path + filename) as f:
content = f.readlines()
return content