def create_fragment_files(self):
alg_subset_count = len(list(self.root_problem.iter_leaves()))
frag_chunk_count = lcm(alg_subset_count,self.options.cpu)//alg_subset_count
_LOG.info("%d taxa pruned from backbone and added to fragments: %s" %(len(self.filtered_taxa), " , ".join(self.filtered_taxa)))
return self.read_and_divide_fragments(frag_chunk_count, extra_frags =\
self.root_problem.subalignment.get_soft_sub_alignment(\
self.filtered_taxa))
def create_fragment_files(self):
alg_subset_count = len(list(self.root_problem.iter_leaves()))
frag_chunk_count = lcm(alg_subset_count,self.options.cpu)//alg_subset_count
_LOG.info("%d taxa pruned from backbone and added to fragments: %s" %(len(self.filtered_taxa), " , ".join(self.filtered_taxa)))
return self.read_and_divide_fragments(frag_chunk_count, extra_frags =\
self.root_problem.subalignment.get_soft_sub_alignment(\
self.filtered_taxa))
def create_fragment_files(self):
alg_subset_count = len(list(self.root_problem.iter_leaves()))
frag_chunk_count = lcm(alg_subset_count,
self.options.cpu) // alg_subset_count
return self.read_and_divide_fragments(frag_chunk_count)
def create_fragment_files(self):
alg_subset_count = len(list(self.root_problem.iter_leaves()))
frag_chunk_count = lcm(alg_subset_count,self.options.cpu)//alg_subset_count
return self.read_and_divide_fragments(frag_chunk_count)