Python is_bam Exemples

Exemple #1

Fichier : test_bamtools.py Projet : sequana/sequana

def test_is_sam_bam():

    datatest = sequana_data("test_measles.sam", "testing")
    assert is_sam(datatest) is True

    datatest = sequana_data("test_measles.bam", "testing")
    assert is_bam(datatest) is True

Exemple #2

def sniffer(filename):

    try:
        if is_sam(filename): return "SAM"
    except:
        pass

    try:
        if is_bam(filename): return "BAM"
    except:
        pass

    try:
        if is_cram(filename): return "CRAM"
    except:
        pass

    try:
        if is_fastq(filename): return "FASTQ"
    except:
        pass

    try:
        if is_fasta(filename): return "FASTA"
    except:
        pass

Exemple #3

def test_is_sam_bam():

    datatest = sequana_data("test_measles.sam", "testing")
    assert is_sam(datatest) is True

    datatest = sequana_data("test_measles.bam", "testing")
    assert is_bam(datatest) is True

Exemple #4

Fichier : sniffer.py Projet : sequana/sequana

def sniffer(filename):

    try:
        if is_sam(filename): return "SAM"
    except:
        pass

    try:
        if is_bam(filename): return "BAM"
    except:
        pass

    try:
        if is_cram(filename): return "CRAM"
    except:
        pass

    try:
        if is_fastq(filename): return "FASTQ"
    except:
        pass

    try:
        if is_fasta(filename): return "FASTA"
    except:
        pass