def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self,
conf,
options,
output_prefix,
init_equations=False)
self.setup_options()
self.cached_coefs = None
self.n_micro = kwargs.get('n_micro', None)
self.macro_deformation = None
self.micro_coors = None
self.updating_corrs = None
self.micro_state_cache = {}
self.multiproc_mode = None
mac_def = self.app_options.macro_deformation
if mac_def is not None and isinstance(mac_def, nm.ndarray):
self.n_micro = mac_def.shape[0]
self.setup_macro_deformation(mac_def)
if self.n_micro is not None:
coors = self.problem.domain.get_mesh_coors()
self.micro_coors = nm.empty((self.n_micro, ) + coors.shape,
dtype=nm.float64)
for im in range(self.n_micro):
self.micro_coors[im, ...] = coors
output_dir = self.problem.output_dir
if conf._filename is not None:
shutil.copyfile(conf._filename,
op.join(output_dir, op.basename(conf._filename)))
def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self, conf, options, output_prefix,
init_equations=False)
self.setup_options()
self.cached_coefs = None
self.n_micro = kwargs.get('n_micro', None)
self.macro_deformation = None
self.micro_coors = None
self.updating_corrs = None
self.micro_state_cache = {}
self.multiproc_mode = None
mac_def = self.app_options.macro_deformation
if mac_def is not None and isinstance(mac_def, nm.ndarray):
self.n_micro = mac_def.shape[0]
self.setup_macro_deformation(mac_def)
if self.n_micro is not None:
coors = self.problem.domain.get_mesh_coors()
self.micro_coors = nm.empty((self.n_micro,) + coors.shape,
dtype=nm.float64)
for im in range(self.n_micro):
self.micro_coors[im, ...] = coors
output_dir = self.problem.output_dir
if conf._filename is not None:
shutil.copyfile(conf._filename,
op.join(output_dir, op.basename(conf._filename)))
def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self, conf, options, output_prefix, init_equations=False)
self.setup_options()
output_dir = self.problem.output_dir
shutil.copyfile(conf._filename, op.join(output_dir, op.basename(conf._filename)))
def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self, conf, options, output_prefix,
init_equations=False)
self.setup_options()
output_dir = self.problem.output_dir
shutil.copyfile(conf._filename,
op.join(output_dir, op.basename(conf._filename)))
def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self,
conf,
options,
output_prefix,
init_equations=False)
self.setup_options()
self.n_micro = kwargs.get('n_micro',
self.app_options.get('n_micro', None))
self.updating_corrs = None
self.micro_state_cache = {}
self.multiproc_mode = None
self.micro_states = None if self.n_micro is None else {}
# macroscopic data given in problem options dict.
macro_data = self.app_options.macro_data
if macro_data is not None:
self.n_micro = macro_data[list(macro_data.keys())[0]].shape[0]
self.setup_macro_data(macro_data)
if self.n_micro is not None:
for k in self.app_options.micro_update:
if not k == 'coors':
self.micro_states[k] = None
coors = self.problem.domain.get_mesh_coors()
c_sh = (self.n_micro, ) + coors.shape
self.micro_states['coors'] = nm.empty(c_sh, dtype=nm.float64)
mac_ids = kwargs.get('mac_ids',
self.app_options.get('mac_ids', None))
self.micro_states['id'] = []
for im in range(self.n_micro):
self.micro_states['coors'][im] = coors
self.micro_states['id'].append(
mac_ids[im] if mac_ids is not None else im)
output_dir = self.problem.output_dir
if conf._filename is not None:
shutil.copyfile(conf._filename,
op.join(output_dir, op.basename(conf._filename)))
def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self, conf, options, output_prefix,
init_equations=False)
def __init__(self, conf, options, output_prefix, **kwargs):
PDESolverApp.__init__(self,
conf,
options,
output_prefix,
init_equations=False)
