def setUp(self):
self._old_logger_level = logger.getEffectiveLevel()
logger.setLevel(logging.ERROR)
from sherpa.astro.io import read_pha
from sherpa.astro import xspec
# Ensure we have a known set of XSPEC settings.
# At present this is just the abundance and cross-section,
# since the cosmology settings do not affect any of the
# models used here.
#
self._xspec_settings = {
'abund': xspec.get_xsabund(),
'xsect': xspec.get_xsxsect()
}
xspec.set_xsabund('angr')
xspec.set_xsxsect('bcmc')
pha_fname = self.make_path("9774.pi")
self.data = read_pha(pha_fname)
self.data.notice(0.5, 7.0)
bkg_fname = self.make_path("9774_bg.pi")
self.bkg = read_pha(bkg_fname)
abs1 = xspec.XSphabs('abs1')
p1 = PowLaw1D('p1')
self.model = abs1 + p1
self.model_mult = abs1 * p1
pi2278 = self.make_path("pi2278.fits")
pi2286 = self.make_path("pi2286.fits")
self.data_pi2278 = read_pha(pi2278)
self.data_pi2286 = read_pha(pi2286)
def tearDown(self):
from sherpa.astro import xspec
self._xspec_settings = {
'abund': xspec.get_xsabund(),
'xsect': xspec.get_xsxsect()
}
xspec.set_xsabund(self._xspec_settings['abund'])
xspec.set_xsxsect(self._xspec_settings['xsect'])
if hasattr(self, "_old_logger_level"):
logger.setLevel(self._old_logger_level)
def test_proj_bubble(run_thread):
# How sensitive are the results to the change from bcmc to vern
# made in XSPEC 12.10.1? It looks like the mekal best-fit
# temperature can jump from ~17.9 to 18.6, so require bcmc
# in this test.
#
xspec.set_xsxsect('bcmc')
models = run_thread('proj_bubble')
fit_results = ui.get_fit_results()
covarerr = sqrt(fit_results.extra_output['covar'].diagonal())
assert covarerr[0] == approx(0, rel=1e-4)
assert covarerr[1] == approx(8.74608e-07, rel=1e-2)
# Fit -- Results from reminimize
assert models['mek1'].kt.val == approx(17.8849, rel=1e-2)
assert models['mek1'].norm.val == approx(4.15418e-06, rel=1e-2)
# Fit -- Results from reminimize
# The fit results change in XSPEC 12.10.0 since the mekal model
# was changed (FORTRAN to C++). A 1% difference is used for the
# parameter ranges from covar and proj (matches the tolerance for
# the fit results). Note that this tolerance has been relaced to
# 10% for the kT errors, as there is a significant change seen
# with different XSPEC versions for the covariance results.
#
# Covar
#
# TODO: should this check that parmaxes is -1 * parmins instead?
covar = ui.get_covar_results()
assert covar.parmins[0] == approx(-0.328832, rel=0.1)
assert covar.parmins[1] == approx(-8.847916e-7, rel=0.01)
assert covar.parmaxes[0] == approx(0.328832, rel=0.1)
assert covar.parmaxes[1] == approx(8.847916e-7, rel=0.01)
# Proj -- Upper bound of kT can't be found
#
proj = ui.get_proj_results()
assert proj.parmins[0] == approx(-12.048069, rel=0.01)
assert proj.parmins[1] == approx(-9.510913e-07, rel=0.01)
assert proj.parmaxes[1] == approx(2.403640e-06, rel=0.01)
assert proj.parmaxes[0] is None
def reset_xspec():
from sherpa.astro import xspec
# Ensure we have a known set of XSPEC settings.
# At present this is just the abundance and cross-section,
# since the cosmology settings do not affect any of the
# models used here.
#
abund = xspec.get_xsabund()
xsect = xspec.get_xsxsect()
xspec.set_xsabund('angr')
xspec.set_xsxsect('bcmc')
yield
xspec.set_xsabund(abund)
xspec.set_xsxsect(xsect)
def fix_xspec(clean_astro_ui, hide_logging):
"""As of XSPEC 12.11.1 it's useful to fix abundance/cross sections
rather than rely on reading from the user's directory
This requires XSPEC support.
"""
# As of XSPEC 12.10.1, it is safest to explicitly set
# the state to a known value. For now just pick the
# "easy" settings.
#
abund = xspec.get_xsabund()
xsect = xspec.get_xsxsect()
xspec.set_xsabund('angr')
xspec.set_xsxsect('bcmc')
yield
xspec.set_xsabund(abund)
xspec.set_xsxsect(xsect)
def setUp(self):
self.is_crates_io = False
try:
import sherpa.astro.io
if "sherpa.astro.io.crates_backend" == sherpa.astro.io.backend.__name__:
self.is_crates_io = True
except ImportError:
self.is_crates_io = False
self.old_state = ui._session.__dict__.copy()
self.old_level = logger.getEffectiveLevel()
logger.setLevel(logging.CRITICAL)
# Store XSPEC settings, if applicable
if has_xspec:
self.old_xspec = xspec.get_xsstate()
# As of XSPEC 12.10.1, it is safest to explicitly set
# the state to a known value. For now just pick the
# "easy" settings.
#
xspec.set_xsabund('angr')
xspec.set_xsxsect('bcmc')