def save(self, filename, kind):
"""Save current mask in a file
:param str filename: The file where to save to mask
:param str kind: The kind of file to save in 'edf', 'tif', 'npy', 'h5'
or 'msk' (if FabIO is installed)
:raise Exception: Raised if the file writing fail
"""
if kind == 'edf':
edfFile = EdfFile(filename, access="w+")
edfFile.WriteImage({}, self.getMask(copy=False), Append=0)
elif kind == 'tif':
tiffFile = TiffIO(filename, mode='w')
tiffFile.writeImage(self.getMask(copy=False), software='silx')
elif kind == 'npy':
try:
numpy.save(filename, self.getMask(copy=False))
except IOError:
raise RuntimeError("Mask file can't be written")
elif ("." + kind) in NEXUS_HDF5_EXT:
self._saveToHdf5(filename, self.getMask(copy=False))
elif kind == 'msk':
if fabio is None:
raise ImportError(
"Fit2d mask files can't be written: Fabio module is not available"
)
try:
data = self.getMask(copy=False)
image = fabio.fabioimage.FabioImage(data=data)
image = image.convert(fabio.fit2dmaskimage.Fit2dMaskImage)
image.save(filename)
except Exception:
_logger.debug("Backtrace", exc_info=True)
raise RuntimeError("Mask file can't be written")
else:
raise ValueError("Format '%s' is not supported" % kind)
def _saveImage(self, plot, filename, nameFilter):
"""Save an image from the plot.
:param str filename: The name of the file to write
:param str nameFilter: The selected name filter
:return: False if format is not supported or save failed,
True otherwise.
"""
if nameFilter not in self.DEFAULT_IMAGE_FILTERS:
return False
image = plot.getActiveImage()
if image is None:
qt.QMessageBox.warning(
plot, "No Data", "No image to be saved")
return False
data = image.getData(copy=False)
# TODO Use silx.io for writing files
if nameFilter == self.IMAGE_FILTER_EDF:
edfFile = EdfFile(filename, access="w+")
edfFile.WriteImage({}, data, Append=0)
return True
elif nameFilter == self.IMAGE_FILTER_TIFF:
tiffFile = TiffIO(filename, mode='w')
tiffFile.writeImage(data, software='silx')
return True
elif nameFilter == self.IMAGE_FILTER_NUMPY:
try:
numpy.save(filename, data)
except IOError:
self._errorMessage('Save failed\n')
return False
return True
elif nameFilter == self.IMAGE_FILTER_NXDATA:
entryPath = self._selectWriteableOutputGroup(filename)
if entryPath is None:
return False
xorigin, yorigin = image.getOrigin()
xscale, yscale = image.getScale()
xaxis = xorigin + xscale * numpy.arange(data.shape[1])
yaxis = yorigin + yscale * numpy.arange(data.shape[0])
xlabel, ylabel = self._getAxesLabels(image)
interpretation = "image" if len(data.shape) == 2 else "rgba-image"
return save_NXdata(filename,
nxentry_name=entryPath,
signal=data,
axes=[yaxis, xaxis],
signal_name="image",
axes_names=["y", "x"],
axes_long_names=[ylabel, xlabel],
title=plot.getGraphTitle(),
interpretation=interpretation)
elif nameFilter in (self.IMAGE_FILTER_ASCII,
self.IMAGE_FILTER_CSV_COMMA,
self.IMAGE_FILTER_CSV_SEMICOLON,
self.IMAGE_FILTER_CSV_TAB):
csvdelim, filetype = {
self.IMAGE_FILTER_ASCII: (' ', 'txt'),
self.IMAGE_FILTER_CSV_COMMA: (',', 'csv'),
self.IMAGE_FILTER_CSV_SEMICOLON: (';', 'csv'),
self.IMAGE_FILTER_CSV_TAB: ('\t', 'csv'),
}[nameFilter]
height, width = data.shape
rows, cols = numpy.mgrid[0:height, 0:width]
try:
save1D(filename, rows.ravel(), (cols.ravel(), data.ravel()),
filetype=filetype,
xlabel='row',
ylabels=['column', 'value'],
csvdelim=csvdelim,
autoheader=True)
except IOError:
self._errorMessage('Save failed\n')
return False
return True
elif nameFilter == self.IMAGE_FILTER_RGB_PNG:
# Get displayed image
rgbaImage = image.getRgbaImageData(copy=False)
# Convert RGB QImage
qimage = convertArrayToQImage(rgbaImage[:, :, :3])
if qimage.save(filename, 'PNG'):
return True
else:
_logger.error('Failed to save image as %s', filename)
qt.QMessageBox.critical(
self.parent(),
'Save image as',
'Failed to save image')
return False
def _saveImage(self, filename, nameFilter):
"""Save an image from the plot.
:param str filename: The name of the file to write
:param str nameFilter: The selected name filter
:return: False if format is not supported or save failed,
True otherwise.
"""
if nameFilter not in self.IMAGE_FILTERS:
return False
image = self.plot.getActiveImage()
if image is None:
qt.QMessageBox.warning(self.plot, "No Data",
"No image to be saved")
return False
data = image.getData(copy=False)
# TODO Use silx.io for writing files
if nameFilter == self.IMAGE_FILTER_EDF:
edfFile = EdfFile(filename, access="w+")
edfFile.WriteImage({}, data, Append=0)
return True
elif nameFilter == self.IMAGE_FILTER_TIFF:
tiffFile = TiffIO(filename, mode='w')
tiffFile.writeImage(data, software='silx')
return True
elif nameFilter == self.IMAGE_FILTER_NUMPY:
try:
numpy.save(filename, data)
except IOError:
self._errorMessage('Save failed\n')
return False
return True
elif nameFilter in (self.IMAGE_FILTER_ASCII,
self.IMAGE_FILTER_CSV_COMMA,
self.IMAGE_FILTER_CSV_SEMICOLON,
self.IMAGE_FILTER_CSV_TAB):
csvdelim, filetype = {
self.IMAGE_FILTER_ASCII: (' ', 'txt'),
self.IMAGE_FILTER_CSV_COMMA: (',', 'csv'),
self.IMAGE_FILTER_CSV_SEMICOLON: (';', 'csv'),
self.IMAGE_FILTER_CSV_TAB: ('\t', 'csv'),
}[nameFilter]
height, width = data.shape
rows, cols = numpy.mgrid[0:height, 0:width]
try:
save1D(filename,
rows.ravel(), (cols.ravel(), data.ravel()),
filetype=filetype,
xlabel='row',
ylabels=['column', 'value'],
csvdelim=csvdelim,
autoheader=True)
except IOError:
self._errorMessage('Save failed\n')
return False
return True
elif nameFilter in (self.IMAGE_FILTER_RGB_PNG,
self.IMAGE_FILTER_RGB_TIFF):
# Get displayed image
rgbaImage = image.getRgbaImageData(copy=False)
# Convert RGB QImage
qimage = convertArrayToQImage(rgbaImage[:, :, :3])
if nameFilter == self.IMAGE_FILTER_RGB_PNG:
fileFormat = 'PNG'
else:
fileFormat = 'TIFF'
if qimage.save(filename, fileFormat):
return True
else:
_logger.error('Failed to save image as %s', filename)
qt.QMessageBox.critical(self.parent(), 'Save image as',
'Failed to save image')
return False