def __init__(self,
name,
session,
managerlocation=None,
otherdatabinder=None,
otherdbdatakeeper=None,
tcpport=None,
launcher=None,
panel=None):
self.name = name
self.panel = panel
self.initializeLogger()
self.managerclient = None
if session is None or isinstance(session, leginondata.SessionData):
self.session = session
else:
raise TypeError('session must be of proper type')
self.launcher = launcher
if otherdatabinder is None:
name = DataBinder.__name__
databinderlogger = gui.wx.Logging.getNodeChildLogger(name, self)
self.databinder = DataBinder(self,
databinderlogger,
tcpport=tcpport)
else:
self.databinder = otherdatabinder
if otherdbdatakeeper is None:
self.dbdatakeeper = sinedon.getConnection('leginondata')
else:
self.dbdatakeeper = otherdbdatakeeper
self.confirmationevents = {}
self.eventswaiting = {}
self.ewlock = threading.Lock()
#self.addEventInput(event.Event, self.logEventReceived)
self.addEventInput(event.KillEvent, self.die)
self.addEventInput(event.ConfirmationEvent, self.handleConfirmedEvent)
self.addEventInput(event.SetManagerEvent, self.handleSetManager)
self.addEventInput(event.ApplicationLaunchedEvent,
self.handleApplicationEvent)
self.managerlocation = managerlocation
if managerlocation is not None:
try:
self.setManager(self.managerlocation)
except:
self.logger.exception('exception in setManager')
raise
correctorclient.CorrectorClient.__init__(self)
self.initializeSettings()
def __init__(self, name, session, managerlocation=None, otherdatabinder=None, otherdbdatakeeper=None, tcpport=None, launcher=None, panel=None):
self.name = name
self.panel = panel
self.initializeLogger()
self.managerclient = None
if session is None or isinstance(session, leginondata.SessionData):
self.session = session
else:
raise TypeError('session must be of proper type')
self.launcher = launcher
if otherdatabinder is None:
name = DataBinder.__name__
databinderlogger = gui.wx.Logging.getNodeChildLogger(name, self)
self.databinder = DataBinder(self, databinderlogger, tcpport=tcpport)
else:
self.databinder = otherdatabinder
if otherdbdatakeeper is None:
self.dbdatakeeper = sinedon.getConnection('leginondata')
else:
self.dbdatakeeper = otherdbdatakeeper
self.confirmationevents = {}
self.eventswaiting = {}
self.ewlock = threading.Lock()
#self.addEventInput(event.Event, self.logEventReceived)
self.addEventInput(event.KillEvent, self.die)
self.addEventInput(event.ConfirmationEvent, self.handleConfirmedEvent)
self.addEventInput(event.SetManagerEvent, self.handleSetManager)
self.addEventInput(event.ApplicationLaunchedEvent, self.handleApplicationEvent)
self.managerlocation = managerlocation
if managerlocation is not None:
try:
self.setManager(self.managerlocation)
except:
self.logger.exception('exception in setManager')
raise
correctorclient.CorrectorClient.__init__(self)
self.initializeSettings()
del self.targetlistevents[tid]
self.logger.info('%s done waiting' % (self.name,))
## if waiting for more than one, only returns status of final one
return status
if __name__ == '__main__':
import node
import sinedon
class TestNode(node.Node, TargetHandler):
pass
def __init__(self, id, session=None, managerlocation=None):
node.Node.__init__(self, id, session, managerlocation)
db = sinedon.getConnection('leginondata')
t = TestNode('testnode')
s = leginondata.SessionData(name='04may26a')
s = db.query(s, results=1)
s = s[0]
print 's', s
im = db.direct_query(leginondata.AcquisitionImageData, 49780)
print 'DONE DIRECT', im.dbid
tar = t.researchTargets(session=s, image=im)
print 'LEN', len(tar)
print 'DBID', tar[0].dbid
#print 'TAR0', tar[0]
print 'IM REF', tar[0].special_getitem('image', dereference=False)
#!/usr/bin/env python
import ccd
import mrc
import sinedon
from leginon import leginondata
import mem
import sinedon.data
sinedon.data.holdImages(False)
db = sinedon.getConnection("leginondata")
corrector = ccd.Corrector()
session = leginondata.SessionData(name="07jun05b")
print "BIAS"
query = leginondata.AcquisitionImageData(session=session, label="bias1")
images = db.query(query, readimages=False)
print "Found %d images" % (len(images),)
for image in images:
filename = image["filename"]
print "Inserting: ", filename
corrector.insertBias(image["image"])
finalbias = corrector.bias()
print "saving bias.mrc"
mrc.write(finalbias, "bias.mrc")
print "DARK"
query = leginondata.AcquisitionImageData(session=session, label="dark1")
