def __init__(self, fragments=None, features=None, taps=None, **kwargs):
assert features is not None, "Supply features!"
AnnotatedNLAIIIMolecule.__init__(self,
fragments,
features=features,
**kwargs)
TAPSMolecule.__init__(self, fragments=fragments, taps=taps, **kwargs)
def write_tags_to_psuedoreads(self, reads):
AnnotatedNLAIIIMolecule.write_tags_to_psuedoreads(self, reads)
TAPSMolecule.write_tags_to_psuedoreads(self, reads, call_super=False)
def is_valid(self, set_rejection_reasons=False):
return AnnotatedNLAIIIMolecule.is_valid(
self, set_rejection_reasons=set_rejection_reasons
) and TAPSMolecule.is_valid(
self, set_rejection_reasons=set_rejection_reasons)
def write_tags(self):
AnnotatedNLAIIIMolecule.write_tags(self)
TAPSMolecule.write_tags(self)