Exemple #1
0
 def post(self):
     form = cgi.FieldStorage() 
     chemical_name = form.getvalue('chemical_name')
    # select_receptor = form.getvalue('select_receptor')
    # bw_bird = form.getvalue('body_weight_of_bird')
    # bw_mamm = form.getvalue('body_weight_of_mammal')
     sol = form.getvalue('solubility')
     ld50_a = form.getvalue('ld50_a')
     ld50_m = form.getvalue('ld50_m')
     aw_bird = form.getvalue('aw_bird')
     # tw_bird = form.getvalue('body_weight_of_the_tested_bird')
     aw_mamm = form.getvalue('aw_mamm')
     # tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
     mineau = form.getvalue('mineau_scaling_factor')
     noael = form.getvalue('NOAEL')
     noaec_d = form.getvalue('NOAEC_d')
     noaec_q = form.getvalue('NOAEC_q')
     noaec_o = form.getvalue('NOAEC_o')
     # noaec_o2 = form.getvalue('NOAEC_o2')
     Species_of_the_bird_NOAEC_CHOICES = form.getvalue('NOAEC_species')
     bw_quail = form.getvalue('bw_quail')
     bw_duck = form.getvalue('bw_duck')
     bwb_other = form.getvalue('bwb_other')
     bw_rat = form.getvalue('bw_rat')
     bwm_other = form.getvalue('bwm_other')
     b_species = form.getvalue('b_species')
     m_species = form.getvalue('m_species')
     sip_obj = sip_model.sip(True,True,'single',chemical_name, b_species, m_species, bw_quail, bw_duck, bwb_other, bw_rat, bwm_other, sol, ld50_a, ld50_m, aw_bird, mineau, aw_mamm, noaec_d, noaec_q, noaec_o, Species_of_the_bird_NOAEC_CHOICES, noael)
     text_file = open('sip/sip_description.txt','r')
     x = text_file.read()
     templatepath = os.path.dirname(__file__) + '/../templates/'
     ChkCookie = self.request.cookies.get("ubercookie")
     html = uber_lib.SkinChk(ChkCookie, "SIP Output")
     html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'sip','page':'output'})
     html = html + template.render (templatepath + '03ubertext_links_left.html', {})                
     html = html + template.render(templatepath + '04uberoutput_start.html', {
             'model':'sip', 
             'model_attributes':'SIP Output'})     
     html = html + sip_tables.timestamp(sip_obj)
     html = html + sip_tables.table_all(sip_obj)
     html = html + template.render(templatepath + 'export.html', {})
     html = html + template.render(templatepath + '04uberoutput_end.html', {})
     html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
     rest_funcs.save_dic(html, sip_obj.__dict__, "sip", "single")
     self.response.out.write(html)
Exemple #2
0
        testFailureMessage = "Test of function name: %s expected: %s != calculated: %s" % ("chronconm",self.sip_obj.chronconm_out,fun)
        self.assertEqual(fun,self.chronconm_out,testFailureMessage)

def suite(TestCaseName, **kwargs):
    suite = unittest.TestSuite()
    set_globals(**kwargs)
    suite.addTest(unittest.makeSuite(TestCaseName))
    stream = StringIO()
    runner = unittest.TextTestRunner(stream=stream, verbosity=2)
    result = runner.run(suite)
    stream.seek(0)
    test_out=stream.read()
    return test_out


sip_obj = sip_model.sip(True,True,'qaqc',chemical_name[0], b_species[0], m_species[0], bw_quail[0], bw_duck[0], bwb_other[0], bw_rat[0], bwm_other[0], sol[0], avian_ld50[0], mammalian_ld50[0], aw_bird[0], mineau[0], aw_mamm[0], noaec_d[0], noaec_q[0], noaec_o[0], Species_of_the_bird_NOAEC_CHOICES[0], noael[0])
sip_obj.set_unit_testing_variables()

sip_obj.chemical_name_expected = chemical_name[0]
sip_obj.dose_bird_out_expected = dose_bird_out[0]
sip_obj.dose_mamm_out_expected = dose_mamm_out[0]
sip_obj.at_bird_out_expected = at_bird_out[0]
sip_obj.at_mamm_out_expected = at_mamm_out[0]
sip_obj.det_out_expected = det_out[0]
sip_obj.act_out_expected = act_out[0]
sip_obj.acute_bird_out_expected = acute_bird_out[0]
sip_obj.acuconb_out_expected = acuconb_out[0]
sip_obj.acute_mamm_out_expected = acute_mamm_out[0]
sip_obj.acuconm_out_expected = acuconm_out[0]
sip_obj.chron_bird_out_expected = chron_bird_out[0]
sip_obj.chronconb_out_expected = chronconb_out[0]
Exemple #3
0
def html_table(row_inp_all):
    while True:
        row_inp_temp_all = row_inp_all.get()
        if row_inp_temp_all is None:
            break
        else:
            row_inp = row_inp_temp_all[0]
            iter = row_inp_temp_all[1]

            logger.info("iteration: " + str(iter))
            chemical_name.append(str(row_inp[0]))
            b_species.append(float(row_inp[1]))
            m_species.append(float(row_inp[2]))
            bw_quail.append(float(row_inp[3]))
            bw_duck.append(float(row_inp[4]))
            bwb_other.append(float(row_inp[5])) 
            bw_rat.append(float(row_inp[6]))
            bwm_other.append(float(row_inp[7]))
            sol.append(float(row_inp[8]))
            avian_ld50.append(float(row_inp[9])) 
            mammalian_ld50.append(float(row_inp[10]))
            aw_bird.append(float(row_inp[11]))
            mineau.append(float(row_inp[12]))
            aw_mamm.append(float(row_inp[13]))
            noaec_d.append(float(row_inp[14]))
            noaec_q.append(float(row_inp[15]))
            noaec_o.append(float(row_inp[16]))
            noael.append(float(row_inp[17]))
            Species_of_the_bird_NOAEC_CHOICES.append(str(row_inp[18]))
            if Species_of_the_bird_NOAEC_CHOICES[iter] == '1':
                noaec.append(float(row_inp[14]))
            elif Species_of_the_bird_NOAEC_CHOICES[iter] == '2':
                noaec.append(float(row_inp[15]))
            elif Species_of_the_bird_NOAEC_CHOICES[iter] == '3':
                noaec.append(float(row_inp[16]))

            logger.info(chemical_name)
            logger.info(b_species)
            logger.info(m_species)
            logger.info(bw_quail)
            logger.info(bw_duck)
            logger.info(bwb_other)
            logger.info(bw_rat)
            logger.info(bwm_other)
            logger.info(sol)
            logger.info(avian_ld50)
            logger.info(mammalian_ld50)
            logger.info(aw_bird)
            logger.info(mineau)
            logger.info(aw_mamm)
            logger.info(noaec_d)
            logger.info(noaec_q)
            logger.info(noaec_o)
            logger.info(noael)
            logger.info(Species_of_the_bird_NOAEC_CHOICES)

            sip_obj = sip_model.sip(True,True,'batch',chemical_name[iter], b_species[iter], m_species[iter], bw_quail[iter],
                            bw_duck[iter], bwb_other[iter], bw_rat[iter], bwm_other[iter], sol[iter], avian_ld50[iter],
                            mammalian_ld50[iter], aw_bird[iter], mineau[iter], aw_mamm[iter], noaec_d[iter], noaec_q[iter], noaec_o[iter], Species_of_the_bird_NOAEC_CHOICES[iter], noael[iter])

            dose_bird_out.append(sip_obj.dose_bird_out)
            dose_mamm_out.append(sip_obj.dose_mamm_out)
            at_bird_out.append(sip_obj.at_bird_out)
            at_mamm_out.append(sip_obj.at_mamm_out)
            det_out.append(sip_obj.det_out)
            act_out.append(sip_obj.act_out)
            acute_bird_out.append(sip_obj.acute_bird_out)
            acuconb_out.append(sip_obj.acuconb_out)
            acute_mamm_out.append(sip_obj.acute_mamm_out)
            acuconm_out.append(sip_obj.acuconm_out)
            chron_bird_out.append(sip_obj.chron_bird_out)
            chronconb_out.append(sip_obj.chronconb_out)
            chron_mamm_out.append(sip_obj.chron_mamm_out)
            chronconm_out.append(sip_obj.chronconm_out)

            jid_all.append(sip_obj.jid)
            sip_all.append(sip_obj)    
            if iter == 0:
                jid_batch.append(sip_obj.jid)

            batch_header = """
                <div class="out_">
                    <br><H3>Batch Calculation of Iteration %s:</H3>
                </div>
                """%(iter + 1)

            out_html_temp = batch_header + sip_tables.table_all(sip_obj)
            out_html_all[iter]=out_html_temp