def __eq__(self, other):
return MetadataMixin._eq_(self, other)
def __eq__(self, other):
"""Determine if this MSA is equal to another.
``TabularMSA`` objects are equal if their sequences, index, metadata,
and positional metadata are equal.
Parameters
----------
other : TabularMSA
MSA to test for equality against.
Returns
-------
bool
Indicates whether this MSA is equal to `other`.
Examples
--------
>>> from skbio import DNA, RNA, TabularMSA
>>> msa = TabularMSA([DNA('ACG'), DNA('AC-')])
>>> msa == msa
True
MSAs with different sequence characters are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('--G')])
False
MSAs with different types of sequences (different ``dtype``) are not
equal:
>>> msa == TabularMSA([RNA('ACG'), RNA('AC-')])
False
MSAs with different sequence metadata are not equal:
>>> msa == TabularMSA([DNA('ACG', metadata={'id': 'a'}), DNA('AC-')])
False
MSAs with different index labels are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('AC-')], minter=str)
False
MSAs with different metadata are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('AC-')],
... metadata={'id': 'msa-id'})
False
MSAs with different positional metadata are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('AC-')],
... positional_metadata={'prob': [3, 2, 1]})
False
"""
if not isinstance(other, TabularMSA):
return False
if not MetadataMixin._eq_(self, other):
return False
if not PositionalMetadataMixin._eq_(self, other):
return False
return self._seqs.equals(other._seqs)
def __eq__(self, other):
return MetadataMixin._eq_(self, other)
def __eq__(self, other):
"""Determine if this MSA is equal to another.
``TabularMSA`` objects are equal if their sequences, index, metadata,
and positional metadata are equal.
Parameters
----------
other : TabularMSA
MSA to test for equality against.
Returns
-------
bool
Indicates whether this MSA is equal to `other`.
Examples
--------
>>> from skbio import DNA, RNA, TabularMSA
>>> msa = TabularMSA([DNA('ACG'), DNA('AC-')])
>>> msa == msa
True
MSAs with different sequence characters are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('--G')])
False
MSAs with different types of sequences (different ``dtype``) are not
equal:
>>> msa == TabularMSA([RNA('ACG'), RNA('AC-')])
False
MSAs with different sequence metadata are not equal:
>>> msa == TabularMSA([DNA('ACG', metadata={'id': 'a'}), DNA('AC-')])
False
MSAs with different index labels are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('AC-')], minter=str)
False
MSAs with different metadata are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('AC-')],
... metadata={'id': 'msa-id'})
False
MSAs with different positional metadata are not equal:
>>> msa == TabularMSA([DNA('ACG'), DNA('AC-')],
... positional_metadata={'prob': [3, 2, 1]})
False
"""
if not isinstance(other, TabularMSA):
return False
if not MetadataMixin._eq_(self, other):
return False
if not PositionalMetadataMixin._eq_(self, other):
return False
return self._seqs.equals(other._seqs)
