def test_init_matrices_nw(self):
expected_score_m = [[0, -5, -7, -9], [-5, 0, 0, 0], [-7, 0, 0, 0],
[-9, 0, 0, 0], [-11, 0, 0, 0]]
expected_tback_m = [[0, 3, 3, 3], [2, -1, -1, -1], [2, -1, -1, -1],
[2, -1, -1, -1], [2, -1, -1, -1]]
actual_score_m, actual_tback_m = _init_matrices_nw(
Alignment([DNA('AAA')]), Alignment([DNA('AAAA')]), 5, 2)
np.testing.assert_array_equal(actual_score_m, expected_score_m)
np.testing.assert_array_equal(actual_tback_m, expected_tback_m)
def test_init_matrices_nw(self):
expected_score_m = [[0, -5, -7, -9], [-5, 0, 0, 0], [-7, 0, 0, 0],
[-9, 0, 0, 0], [-11, 0, 0, 0]]
expected_tback_m = [[0, 3, 3, 3], [2, -1, -1, -1], [2, -1, -1, -1],
[2, -1, -1, -1], [2, -1, -1, -1]]
actual_score_m, actual_tback_m = _init_matrices_nw(
TabularMSA([DNA('AAA', metadata={'id': 'id'})]),
TabularMSA([DNA('AAAA', metadata={'id': 'id'})]), 5, 2)
np.testing.assert_array_equal(actual_score_m, expected_score_m)
np.testing.assert_array_equal(actual_tback_m, expected_tback_m)
def test_init_matrices_nw(self):
expected_score_m = [[0, -5, -7, -9],
[-5, 0, 0, 0],
[-7, 0, 0, 0],
[-9, 0, 0, 0],
[-11, 0, 0, 0]]
expected_tback_m = [[0, 3, 3, 3],
[2, -1, -1, -1],
[2, -1, -1, -1],
[2, -1, -1, -1],
[2, -1, -1, -1]]
actual_score_m, actual_tback_m = _init_matrices_nw(
Alignment([DNA('AAA')]), Alignment([DNA('AAAA')]), 5, 2)
np.testing.assert_array_equal(actual_score_m, expected_score_m)
np.testing.assert_array_equal(actual_tback_m, expected_tback_m)
def test_init_matrices_nw(self):
expected_score_m = [[0, -5, -7, -9],
[-5, 0, 0, 0],
[-7, 0, 0, 0],
[-9, 0, 0, 0],
[-11, 0, 0, 0]]
expected_tback_m = [[0, 3, 3, 3],
[2, -1, -1, -1],
[2, -1, -1, -1],
[2, -1, -1, -1],
[2, -1, -1, -1]]
actual_score_m, actual_tback_m = _init_matrices_nw(
TabularMSA([DNA('AAA', metadata={'id': 'id'})]),
TabularMSA([DNA('AAAA', metadata={'id': 'id'})]), 5, 2)
np.testing.assert_array_equal(actual_score_m, expected_score_m)
np.testing.assert_array_equal(actual_tback_m, expected_tback_m)