def __init__(self, parent=None):
ScriptedLoadableModuleWidget.__init__(self, parent)
settings = qt.QSettings()
self.developerMode = SlicerUtil.IsDevelopment
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
self.priority = 2
self.calcificationType = 0
self.ThresholdMin = 130.0
self.ThresholdMax = 1000.0
self.MinimumLesionSize = 1
self.MaximumLesionSize = 500
self.croppedVolumeNode = slicer.vtkMRMLScalarVolumeNode()
self.threshImage = vtk.vtkImageData()
self.marchingCubes = vtk.vtkDiscreteMarchingCubes()
self.transformPolyData = vtk.vtkTransformPolyDataFilter()
self.selectedLabelList = []
self.labelScores = []
self.selectedLabels = {}
self.modelNodes = []
self.voxelVolume = 1.
self.sx = 1.
self.sy = 1.
self.sz = 1.
self.selectedRGB = [1,0,0]
self.observerTags = []
self.xy = []
self.summary_reports=["Agatston Score","Mass Score","Volume"]
self.labelScores = dict()
self.totalScores=dict()
for sr in self.summary_reports:
self.labelScores[sr]=[]
self.totalScores[sr]=0
self.columnsDict = OrderedDict()
self.columnsDict["CaseID"] = "CaseID"
for sr in self.summary_reports:
self.columnsDict[sr.replace(" ","")]=sr
def __init__(self, parent=None):
self.testingServer = None
# state management for compressing events
# - each time an update is requested, start the singleShot timer
# - if the update is requested before the timeout, the call to timer.start() resets it
# - the actual update only happens when the the full time elapses since the last request
self.updateRecentActivityTimer = qt.QTimer()
self.updateRecentActivityTimer.setSingleShot(True)
self.updateRecentActivityTimer.interval = 500
self.updateRecentActivityTimer.connect(
'timeout()', self.onUpateRecentActivityRequestTimeout)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
self.setup()
self.parent.show()
else:
self.parent = parent
self.layout = parent.layout()
globals()['d'] = self
def __init__(self, parent=None):
VTKObservationMixin.__init__(self)
self.editUtil = EditUtil() # Kept for backward compatibility
# mrml volume node instances
self.master = None
self.masterWhenMergeWasSet = None
# Editor color LUT
self.colorNodeID = None
# string
self.createMergeOptions = ""
self.mergeVolumePostfix = "-label"
# slicer helper class
self.volumesLogic = slicer.modules.volumes.logic()
# widgets that are dynamically created on demand
# pseudo signals
# - python callable that gets True or False
self.selectCommand = None
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def __init__(self,
parent=None,
parameterNode=None,
parameter=None,
colorNode=None,
selectCommand=None):
self.colorNode = colorNode
self.parameterNode = parameterNode
self.parameter = parameter
self.selectCommand = selectCommand
self.recents = []
self.label = None
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setObjectName('EditMRMLWidget')
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
p = qt.QCursor().pos()
self.parent.setGeometry(p.x(), p.y(), 300, 700)
self.parent.show()
self.parent.raise_()
else:
self.parent = parent
self.create()
def __init__(self, dbTableName, columnsDict, parentWidget = None, dbFilePath=None):
"""
Widget constructor
:param dbTableName: name of the table that will store the information of the module
:param columnsDict: dictionary of colummKey-ColumnDescription (note that column keys cannot contain special
characters, white spaces, etc.)
:param parentWidget: widget where this ReportsWidget will be inserted
:param dbFilePath: full path of the file that will store the database that is using the widget.
by default, it will be in the settings folder
"""
EventsTrigger.__init__(self)
if not parentWidget:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parentWidget
self.layout = self.parent.layout()
self._showWarningWhenIncompleteColumns_ = True
self.logic = CaseReportsLogic(dbTableName, columnsDict, dbFilePath=dbFilePath)
self.__initEvents__()
self.reportWindow = CaseReportsWindow(self)
self.reportWindow.objectName = "caseReportsWindow"
def setupEditorWidget(self):
editorWidgetParent = slicer.qMRMLWidget()
editorWidgetParent.setLayout(qt.QVBoxLayout())
editorWidgetParent.setMRMLScene(slicer.mrmlScene)
self.editorWidget = EditorWidget(parent=editorWidgetParent)
self.editorWidget.setup()
self.segmentationGroupBoxLayout.addWidget(self.editorWidget.parent)
def __init__(self, parent=None):
VTKObservationMixin.__init__(self)
self.editUtil = EditUtil() # Kept for backward compatibility
# mrml volume node instances
self.master = None
self.masterWhenMergeWasSet = None
# Editor color LUT
self.colorNodeID = None
# string
self.createMergeOptions = ""
self.mergeVolumePostfix = "-label"
# slicer helper class
self.volumesLogic = slicer.modules.volumes.logic()
# widgets that are dynamically created on demand
# pseudo signals
# - python callable that gets True or False
self.selectCommand = None
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def setupEditorWidget(self): editorWidgetParent = slicer.qMRMLWidget() editorWidgetParent.setLayout(qt.QVBoxLayout()) editorWidgetParent.setMRMLScene(slicer.mrmlScene) self.editorWidget = EditorWidget(parent=editorWidgetParent) self.editorWidget.setup() self.segmentationGroupBoxLayout.addWidget(self.editorWidget.parent)
def setupEditorWidget(self): self.editorWidgetParent = slicer.qMRMLWidget() self.editorWidgetParent.setLayout(qt.QVBoxLayout()) self.editorWidgetParent.setMRMLScene(slicer.mrmlScene) self.editUtil = EditorLib.EditUtil.EditUtil() self.editorWidget = EditorWidget(parent=self.editorWidgetParent, showVolumesFrame=False) self.editorWidget.setup() self.editorParameterNode = self.editUtil.getParameterNode()
def __init__(self, parent=None):
ScriptedLoadableModuleWidget.__init__(self, parent)
self.chartOptions = ("LAA%-950", "LAA%-925", "LAA%-910", "LAA%-856",
"HAA%-700", "HAA%-600", "HAA%-500", "HAA%-250",
"Perc10", "Perc15", "Mean", "Std", "Kurtosis",
"Skewness", "Ventilation Heterogeneity", "Mass",
"Volume")
# Build the column keys. Here all the columns are declared, but an alternative could be just:
#self.columnsDict = CaseReportsWidget.getColumnKeysNormalizedDictionary(["Volume Name", "Region", "LAA%-950", ...])
self.columnsDict = OrderedDict()
self.columnsDict["VolumeName"] = "Volume Name"
self.columnsDict["Region"] = "Region"
self.columnsDict["LAA950"] = "LAA%-950"
self.columnsDict["LAA925"] = "LAA%-925"
self.columnsDict["LAA910"] = "LAA%-910"
self.columnsDict["LAA856"] = "LAA%-856"
self.columnsDict["HAA700"] = "HAA%-700"
self.columnsDict["HAA600"] = "HAA%-600"
self.columnsDict["HAA500"] = "HAA%-500"
self.columnsDict["HAA250"] = "HAA%-250"
self.columnsDict["Perc10"] = "Perc10"
self.columnsDict["Perc15"] = "Perc15"
self.columnsDict["Mean"] = "Mean"
self.columnsDict["Std"] = "Std"
self.columnsDict["Kurtosis"] = "Kurtosis"
self.columnsDict["Skewness"] = "Skewness"
self.columnsDict[
"VentilationHeterogeneity"] = "Ventilation Heterogeneity"
self.columnsDict["Mass"] = "Mass"
self.columnsDict["Volume"] = "Volume"
self.rTags = ("WholeLung", "RightLung", "LeftLung", "RUL", "RLL",
"RML", "LUL", "LLL", "LUT", "LMT", "LLT", "RUT", "RMT",
"RLT")
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.logic = None
self.CTNode = None
self.labelNode = None
# self.expNode = None
# self.explabelNode = None
self.fileName = None
self.fileDialog = None
if not parent:
self.setup()
self.CTSelector.setMRMLScene(slicer.mrmlScene)
# self.expSelector.setMRMLScene(slicer.mrmlScene)
self.labelSelector.setMRMLScene(slicer.mrmlScene)
# self.explabelSelector.setMRMLScene(slicer.mrmlScene)
self.parent.show()
def create(self):
if not self.parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.parent.show()
self.frame = qt.QFrame(self.parent)
self.frame.setLayout(qt.QVBoxLayout())
self.parent.layout().addWidget(self.frame)
self.widgets.append(self.frame)
def __init__(self, parent=None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def __init__(self, parent = None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def __init__(self, parent = 0):
self.observerTags = []
self.parameterNode = None
self.parameterNodeTag = None
if parent == 0:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def __init__(self, parent=None):
self.observerTags = []
self.logic = SampleDataLogic(self.logMessage)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
self.setup()
self.parent.show()
else:
self.parent = parent
self.layout = parent.layout()
def __init__(self, parent=None):
ScriptedLoadableModuleWidget.__init__(self, parent)
self.logic = CIP_InteractiveLobeSegmentationLogic()
self.observerTags = []
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def __init__(self, parent=None):
self.observerTags = []
self.logic = SampleDataLogic(self.logMessage)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
self.setup()
self.parent.show()
else:
self.parent = parent
self.layout = parent.layout()
def __init__(self, parent=None):
self.logic = SelfTestsLogic(slicer.selfTests)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
self.setup()
self.parent.show()
else:
self.parent = parent
self.layout = parent.layout()
globals()['selfTests'] = self
def __init__(self, parent = None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
self.logic = SteeredPolyAffineRegistrationLogic()
self.interaction = False
def __init__(self, parent=0, parameter='label', colorNode=None):
VTKObservationMixin.__init__(self)
self.parameterNode = None
self.parameterNodeTag = None
self.parameter = parameter
self.colorBox = None
self.colorNode = colorNode
if parent == 0:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def __init__(self, parent=0, parameter='label',colorNode=None):
VTKObservationMixin.__init__(self)
self.parameterNode = None
self.parameterNodeTag = None
self.parameter = parameter
self.colorBox = None
self.colorNode = colorNode
if parent == 0:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def __init__(self, parent=0, parameter='label'):
self.observerTags = []
self.parameterNode = None
self.parameterNodeTag = None
self.parameter = parameter
self.editUtil = EditUtil.EditUtil()
self.colorBox = None
if parent == 0:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def __init__( self, parent=None ):
print "running something"
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene( slicer.mrmlScene )
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode" ) != 'ScriptedModule':
slicer.mrmlScene.RegisterNodeClass(vtkMRMLScriptedModuleNode())
def __init__(self, parent=0, parameter='label'):
self.observerTags = []
self.parameterNode = None
self.parameterNodeTag = None
self.parameter = parameter
self.editUtil = EditUtil.EditUtil()
self.colorBox = None
if parent == 0:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
self.parent.show()
else:
self.parent = parent
self.create()
def __init__(self, parent = None):
# Get module name by stripping 'Widget' from the class name
self.moduleName = self.__class__.__name__
if self.moduleName.endswith('Widget'):
self.moduleName = self.moduleName[:-6]
settings = qt.QSettings()
self.developerMode = settings.value('Developer/DeveloperMode').lower() == 'true'
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def __init__(self, parent=None):
ScriptedLoadableModuleWidget.__init__(self, parent)
settings = qt.QSettings()
self.developerMode = settings.value(
'Developer/DeveloperMode').lower() == 'true'
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
self.roiManager = None
self.ROIRadius = 20.0
def __init__(self, parent=None):
# Get module name by stripping 'Widget' from the class name
self.moduleName = self.__class__.__name__
if self.moduleName.endswith('Widget'):
self.moduleName = self.moduleName[:-6]
self.developerMode = slicer.util.settingsValue(
'Developer/DeveloperMode', False, lambda v: v.lower() == 'true')
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def create(self,registrationState):
"""Call this method from your subclass to manage dynamic layout
and widget deleting
- registrationState is a callable object that will give you an instance
of a RegistrationState object that you can use to determine the current
state of the fixed, moving, and other parameters of the parent gui.
"""
self.registrationState = registrationState
if not self.parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.parent.show()
self.frame = qt.QFrame(self.parent)
self.frame.objectName = 'EditOptionsFrame'
self.frame.setLayout(qt.QVBoxLayout())
self.parent.layout().addWidget(self.frame)
self.widgets.append(self.frame)
def __init__(self, parent=None):
self.chartOptions = ("Count", "Volume mm^3", "Volume cc", "Min", "Max", "Mean", "StdDev")
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.logic = None
self.grayscaleNode = None
self.labelNode = None
self.fileName = None
self.fileDialog = None
if not parent:
self.setup()
self.grayscaleSelector.setMRMLScene(slicer.mrmlScene)
self.labelSelector.setMRMLScene(slicer.mrmlScene)
self.parent.show()
def __init__(self, parent=None):
# Get module name by stripping 'Widget' from the class name
self.moduleName = self.__class__.__name__
if self.moduleName.endswith('Widget'):
self.moduleName = self.moduleName[:-6]
self.developerMode = slicer.util.settingsValue(
'Developer/DeveloperMode', False, converter=slicer.util.toBool)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
slicer.app.moduleManager().connect('moduleAboutToBeUnloaded(QString)',
self._onModuleAboutToBeUnloaded)
def __init__(self, parent=None):
self.chartOptions = ("Count", "Volume mm^3", "Volume cc", "Min", "Max",
"Mean", "StdDev")
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.logic = None
self.grayscaleNode = None
self.labelNode = None
self.fileName = None
self.fileDialog = None
if not parent:
self.setup()
self.grayscaleSelector.setMRMLScene(slicer.mrmlScene)
self.labelSelector.setMRMLScene(slicer.mrmlScene)
self.parent.show()
def __init__(self, parent=None, parameterNode=None, parameter=None, colorNode=None, selectCommand=None):
self.colorNode = colorNode
self.parameterNode = parameterNode
self.parameter = parameter
self.selectCommand = selectCommand
self.recents = []
self.label = None
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setObjectName('EditMRMLWidget')
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.create()
p = qt.QCursor().pos()
self.parent.setGeometry(p.x(), p.y(), 300, 700)
self.parent.show()
self.parent.raise_()
else:
self.parent = parent
self.create()
def __init__(self, parent=None, showVolumesFrame=True):
VTKObservationMixin.__init__(self)
self.shortcuts = []
self.toolsBox = None
# set attributes from ctor parameters
self.showVolumesFrame = showVolumesFrame
self.editUtil = EditUtil() # Kept for backward compatibility
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
else:
self.parent = parent
self.layout = parent.layout()
ScriptedLoadableModuleWidget.__init__(self, parent)
def __init__(self, parent=None, showVolumesFrame=True):
VTKObservationMixin.__init__(self)
self.shortcuts = []
self.toolsBox = None
# set attributes from ctor parameters
self.showVolumesFrame = showVolumesFrame
self.editUtil = EditUtil() # Kept for backward compatibility
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
else:
self.parent = parent
self.layout = parent.layout()
ScriptedLoadableModuleWidget.__init__(self, parent)
def __init__(self, parent = None):
"""If parent widget is not specified: a top-level widget is created automatically;
the application has to delete this widget (by calling widget.parent.deleteLater() to avoid memory leaks.
"""
# Get module name by stripping 'Widget' from the class name
self.moduleName = self.__class__.__name__
if self.moduleName.endswith('Widget'):
self.moduleName = self.moduleName[:-6]
self.developerMode = slicer.util.settingsValue('Developer/DeveloperMode', False, converter=slicer.util.toBool)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
slicer.app.moduleManager().connect(
'moduleAboutToBeUnloaded(QString)', self._onModuleAboutToBeUnloaded)
def __init__(self, parent = None):
"""If parent widget is not specified: a top-level widget is created automatically;
the application has to delete this widget (by calling widget.parent.deleteLater() to avoid memory leaks.
"""
# Get module name by stripping 'Widget' from the class name
self.moduleName = self.__class__.__name__
if self.moduleName.endswith('Widget'):
self.moduleName = self.moduleName[:-6]
self.developerMode = slicer.util.settingsValue('Developer/DeveloperMode', False, converter=slicer.util.toBool)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
slicer.app.moduleManager().connect(
'moduleAboutToBeUnloaded(QString)', self._onModuleAboutToBeUnloaded)
def __init__(self, parent=None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
self.cameraNode = None
self.cameraNodeObserverTag = None
self.cameraObserverTag= None
# Flythough variables
self.transform = None
self.path = None
self.camera = None
self.skip = 0
self.timer = qt.QTimer()
self.timer.setInterval(20)
self.timer.connect('timeout()', self.flyToNext)
if not parent:
self.setup()
self.cameraNodeSelector.setMRMLScene(slicer.mrmlScene)
self.inputFiducialsNodeSelector.setMRMLScene(slicer.mrmlScene)
self.parent.show()
def __init__(self, parent=None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
self.cameraNode = None
self.cameraNodeObserverTag = None
self.cameraObserverTag = None
# Flythough variables
self.transform = None
self.path = None
self.camera = None
self.skip = 0
self.timer = qt.QTimer()
self.timer.setInterval(20)
self.timer.connect('timeout()', self.flyToNext)
if not parent:
self.setup()
self.cameraNodeSelector.setMRMLScene(slicer.mrmlScene)
self.inputFiducialsNodeSelector.setMRMLScene(slicer.mrmlScene)
self.parent.show()
def __init__(self, parent=None):
self.testingServer = None
# state management for compressing events
# - each time an update is requested, start the singleShot timer
# - if the update is requested before the timeout, the call to timer.start() resets it
# - the actual update only happens when the the full time elapses since the last request
self.updateRecentActivityTimer = qt.QTimer()
self.updateRecentActivityTimer.singleShot = True
self.updateRecentActivityTimer.interval = 500
self.updateRecentActivityTimer.connect('timeout()', self.onUpateRecentActivityRequestTimeout)
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
self.layout = self.parent.layout()
self.setup()
self.parent.show()
else:
self.parent = parent
self.layout = parent.layout()
globals()['d'] = self
def __init__(self, parent = None):
"""
Init function.
@param parent: The parent widget to attach to.
@type parent: qt.QWidget
"""
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
if not parent:
self.setup()
self.parent.show()
self.XnatIo = None
self.layout = self.parent.layout()
XnatSlicerUtils.constructNecessaryModuleDirectories()
self.__collapseDataProbe()
self.__initComponents()
self.__addObservers()
def __init__(self, parent=None):
ScriptedLoadableModuleWidget.__init__(self, parent)
settings = qt.QSettings()
self.developerMode = settings.value('Developer/DeveloperMode').lower() == 'true'
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
self.priority = 2
self.calcinationType = 0
self.ThresholdMin = 130.0
self.ThresholdMax = 2000.0
self.MinimumLesionSize = 1
self.MaximumLesionSize = 2000
self.croppedVolumeNode = slicer.vtkMRMLScalarVolumeNode()
self.threshImage = vtk.vtkImageData()
self.marchingCubes = vtk.vtkDiscreteMarchingCubes()
self.transformPolyData = vtk.vtkTransformPolyDataFilter()
self.selectedLableList = []
self.labelScores = []
self.selectedLables = {}
self.modelNodes = []
self.voxelVolume = 1
self.selectedRGB = [1,0,0]
self.observerTags = []
self.xy = []
self.totalScore = 0
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Format Scene Area
#
loadGroupBox = ctk.ctkCollapsibleGroupBox()
loadGroupBox.setTitle('Sequence Data')
self.layout.addWidget(loadGroupBox)
loadGroupBoxLayout = qt.QFormLayout(loadGroupBox)
self.volumeSequenceComboBox = slicer.qMRMLNodeComboBox()
self.volumeSequenceComboBox.nodeTypes = ( ("vtkMRMLSequenceNode"), "" )
self.volumeSequenceComboBox.setMRMLScene( slicer.mrmlScene )
self.volumeSequenceComboBox.noneEnabled = False
loadGroupBoxLayout.addRow('Volume Sequence: ',self.volumeSequenceComboBox)
self.transformSequenceComboBox = slicer.qMRMLNodeComboBox()
self.transformSequenceComboBox.nodeTypes = ( ("vtkMRMLSequenceNode"), "" )
self.transformSequenceComboBox.selectNodeUponCreation = False
self.transformSequenceComboBox.setMRMLScene( slicer.mrmlScene )
self.transformSequenceComboBox.noneEnabled = True
loadGroupBoxLayout.addRow('Transform Sequence: ',self.transformSequenceComboBox)
self.labelSequenceComboBox = slicer.qMRMLNodeComboBox()
self.labelSequenceComboBox.nodeTypes = ( ("vtkMRMLSequenceNode"), "" )
self.labelSequenceComboBox.selectNodeUponCreation = False
self.labelSequenceComboBox.setMRMLScene( slicer.mrmlScene )
self.labelSequenceComboBox.noneEnabled = True
loadGroupBoxLayout.addRow('Label Sequence: ',self.labelSequenceComboBox)
sliceButtonsLayout = qt.QHBoxLayout()
loadGroupBoxLayout.addRow('Slice Views: ',sliceButtonsLayout)
self.axialCheckbox = qt.QCheckBox('Axial')
self.axialCheckbox.checked = True
sliceButtonsLayout.addWidget(self.axialCheckbox)
self.sagittalCheckBox = qt.QCheckBox('Sagittal')
self.sagittalCheckBox.checked = True
sliceButtonsLayout.addWidget(self.sagittalCheckBox)
self.coronalCheckBox = qt.QCheckBox('Coronal')
self.coronalCheckBox.checked = False
sliceButtonsLayout.addWidget(self.coronalCheckBox)
formatSceneButton = qt.QPushButton('Format Scene')
loadGroupBoxLayout.addRow('',formatSceneButton)
#
# Editor Widget
#
editorWidget = slicer.modules.editor.widgetRepresentation().self()
self.labelEditor = editorWidget.editLabelMapsFrame
self.layout.addWidget(self.labelEditor)
self.labelEditor.collapsed = False
# add vertical spacer
self.layout.addStretch(1)
#
# Format Scene Widget
#
self.formatSceneWidget = slicer.qMRMLWidget()
self.formatSceneWidget.setWindowTitle('Format Scene View')
self.formatSceneWidgetLayout = qt.QGridLayout(self.formatSceneWidget)
nodeSelectionRegion = qt.QGroupBox()
self.formatSceneWidgetLayout.addWidget(nodeSelectionRegion,1,1,4,1)
nodeSelectionRegion.setTitle('Data Selection')
nodeSelectionLayout = qt.QVBoxLayout(nodeSelectionRegion)
volumeSelectionLabel = qt.QLabel('Volume Data')
nodeSelectionLayout.addWidget(volumeSelectionLabel)
volumeSelectionList = slicer.qMRMLListWidget()
nodeSelectionLayout.addWidget(volumeSelectionList)
transformSelectionLabel = qt.QLabel('Transforms')
nodeSelectionLayout.addWidget(transformSelectionLabel)
transformSelectionList = slicer.qMRMLListWidget()
nodeSelectionLayout.addWidget(transformSelectionList)
addToSceneArrow = ctk.ctkPushButton()
self.formatSceneWidgetLayout.addWidget(addToSceneArrow,2,2,1,1)
removeFromSceneArrow = ctk.ctkPushButton()
self.formatSceneWidgetLayout.addWidget(removeFromSceneArrow,3,2,1,1)
organizeSceneRegion = qt.QGroupBox()
self.formatSceneWidgetLayout.addWidget(organizeSceneRegion,1,3,4,5)
organizeSceneRegion.setTitle('Scene Format')
self.organizeSceneRegionLayout = qt.QGridLayout(organizeSceneRegion)
self.backgroundSceneButtons = []
backgroundVolumeBox = qt.QPushButton('Background')
backgroundVolumeBox.setCheckable(True)
#backgroundVolumeBox.connect('toggled(bool)',self.testClick)
self.organizeSceneRegionLayout.addWidget(backgroundVolumeBox,1,1,1,1)
self.backgroundSceneButtons.append(backgroundVolumeBox)
self.foregroundSceneButtons = []
foregroundVolumeBox = qt.QPushButton('Foreground')
foregroundVolumeBox.setCheckable(True)
self.organizeSceneRegionLayout.addWidget(foregroundVolumeBox,2,1,1,1)
#foregroundVolumeBox.connect('toggled(bool)',self.testClick)
backgroundVolumeBox.connect('clicked()',lambda i=1: self.backgroundButtonClicked(i))
foregroundVolumeBox.connect('clicked()',lambda i=1: self.foregroundButtonClicked(i))
self.backgroundSceneButtons.append(backgroundVolumeBox)
self.foregroundSceneButtons.append(foregroundVolumeBox)
#self.backgroundSceneButtons[0].connect('clicked(bool)', self.backgroundButtonClicked(1))
#self.foregroundSceneButtons[0].connect('clicked(bool)', self.foregroundButtonClicked(1))
self.addColumnButton = qt.QPushButton('+Add')
self.organizeSceneRegionLayout.addWidget(self.addColumnButton,1,2,1,1)
self.sceneColumns = 1
loadFormattedSceneButton = qt.QPushButton('Load Scene')
self.formatSceneWidgetLayout.addWidget(loadFormattedSceneButton,5,8,1,1)
# connections
formatSceneButton.connect('clicked(bool)', self.onFormatSceneButtonClicked)
self.addColumnButton.connect('clicked(bool)', self.onAddColumn)
def __initSettingsFile(self):
"""
"""
self.SettingsFile = SettingsFile(slicer.qMRMLWidget(),
XnatSlicerGlobals.LOCAL_URIS['settings'], self)