def get_smart_client(authorization_header, resource_tokens=None):
""" Initialize a new SmartClient"""
oa_params = oauth.parse_header(authorization_header)
resource_tokens={'oauth_token': oa_params['smart_oauth_token'],
'oauth_token_secret':oa_params['smart_oauth_token_secret']}
ret = smart.SmartClient(SMART_SERVER_OAUTH['consumer_key'],
SMART_SERVER_PARAMS,
SMART_SERVER_OAUTH,
resource_tokens)
ret.record_id=oa_params['smart_record_id']
return oa_params, ret
def get_smart_client(authorization_header, resource_tokens=None):
oa_params = oauth.parse_header(authorization_header)
resource_tokens = {
'oauth_token': oa_params['smart_oauth_token'],
'oauth_token_secret': oa_params['smart_oauth_token_secret']
}
server_params = {'api_base': oa_params['smart_container_api_base']}
ret = SmartClient(SMART_SERVER_OAUTH['consumer_key'], server_params,
SMART_SERVER_OAUTH, resource_tokens)
print ret
print ret.baseURL
ret.record_id = oa_params['smart_record_id']
return ret
def get_smart_client(authorization_header, resource_tokens=None):
oa_params = oauth.parse_header(authorization_header)
resource_tokens={'oauth_token': oa_params['smart_oauth_token'],
'oauth_token_secret':oa_params['smart_oauth_token_secret']}
server_params={'api_base': oa_params['smart_container_api_base']}
ret = SmartClient(SMART_SERVER_OAUTH['consumer_key'],
server_params,
SMART_SERVER_OAUTH,
resource_tokens)
print ret
print ret.baseURL
ret.record_id=oa_params['smart_record_id']
return ret
def get_smart_client(authorization_header, resource_tokens=None):
oa_params = oauth.parse_header(authorization_header)
resource_tokens = {
'oauth_token': oa_params['smart_oauth_token'],
'oauth_token_secret': oa_params['smart_oauth_token_secret']
}
server_params = {'api_base': oa_params['smart_container_api_base']}
try:
ret = SmartClient(SMART_SERVER_OAUTH['consumer_key'], server_params,
SMART_SERVER_OAUTH, resource_tokens)
except:
import traceback
print >> sys.stderr, traceback.format_exc()
raise
ret.record_id = oa_params['smart_record_id']
return ret
def get_smart_client(authorization_header, resource_tokens=None):
oa_params = oauth.parse_header(authorization_header)
resource_tokens = {'oauth_token': oa_params['smart_oauth_token'],
'oauth_token_secret': oa_params['smart_oauth_token_secret']}
server_params = {'api_base': oa_params['smart_container_api_base']}
try:
ret = SmartClient(SMART_SERVER_OAUTH['consumer_key'],
server_params,
SMART_SERVER_OAUTH,
resource_tokens)
except:
import traceback
print >> sys.stderr, traceback.format_exc()
raise
ret.record_id = oa_params['smart_record_id']
return ret
def GET(self):
# get the SMArt cookie name
cookie_name = web.input().cookie_name
# extract the cookie and parse it as an oAuth authorization header
smart_connect_cookie = urllib.unquote(web.cookies().get(cookie_name))
oauth_params = oauth.parse_header(smart_connect_cookie)
# extract the parameters needed
record_id = oauth_params['smart_record_id']
resource_credentials = {'oauth_token' : oauth_params['smart_oauth_token'],
'oauth_token_secret' : oauth_params['smart_oauth_token_secret']}
# instantiate the smart client
smart_client = smart.SmartClient(
'*****@*****.**',
{'api_base' : 'http://sandbox-api.smartplatforms.org'},
{'consumer_key' : '*****@*****.**',
'consumer_secret' : 'smartapp-secret'},
resource_credentials)
# get the meds
query = """
PREFIX dcterms:<http://purl.org/dc/terms/>
PREFIX sp:<http://smartplatforms.org/terms#>
PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
SELECT ?drugname ?rxcui
WHERE {
?med rdf:type sp:Medication .
?med sp:drugName ?drugname_code .
?drugname_code dcterms:title ?drugname .
?drugname_code sp:code ?rxcui_url .
?rxcui_url dcterms:identifier ?rxcui .
}
"""
medications = smart_client.records_X_medications_GET(record_id = record_id)
med_names_and_cuis = medications.query(query)
meds = [{'name': med[0], 'rxcui': med[1]} for med in med_names_and_cuis]
# go through the meds and get the FDA Unique Identifier Code
for med in meds:
rxnav_info_xml = urllib.urlopen("http://rxnav.nlm.nih.gov/REST/rxcui/%s/related?rela=has_ingredient" % med['rxcui']).read()
info = ElementTree.fromstring(rxnav_info_xml)
med['ingredients'] = [ing.text for ing in info.findall('relatedGroup/conceptGroup/conceptProperties/name')]
med_names_html = "\n".join(["<li>%s<br /><small>ingredients: %s</small><br /><br /></li>" % (str(med['name']), ", ".join(med['ingredients'])) for med in meds])
return """<!DOCTYPE html>
<html>
<head>
<script src="http://sample-apps.smartplatforms.org/framework/smart/scripts/smart-api-page.js"></script>
</head>
<body><h1>Hello <span id="name"></span></h1>
<script>
document.getElementById('name').innerHTML = SMART.record.full_name;
</script>
<ul>
%s
</ul>
</body>
</html>""" % med_names_html
