from __future__ import print_function
import smile as sm
from smile import flags
from semisupervised.data import build_vocab, translate_tokens
flags.DEFINE_string("smi_path",
"/smile/nfs/projects/nih_drug/data/logp/logp.smi",
"smi data path.")
flags.DEFINE_string(
"tmp_path", "",
"Temporary data path. If none, a named temporary file will be used.")
flags.DEFINE_string("vocab_path", "", "Vocabulary data_path.")
flags.DEFINE_string("out_path", "", "Output token path.")
flags.DEFINE_bool(
"build_vocab", False, "Trigger the action: False for translating only. "
"If true, the script will build vocabulary and then translating.")
FLAGS = flags.FLAGS
def main(_):
"""Entry function for this script."""
if FLAGS.build_vocab:
build_vocab(FLAGS.smi_path, FLAGS.vocab_path, FLAGS.out_path,
FLAGS.tmp_path)
else:
translate_tokens(FLAGS.smi_path, FLAGS.vocab_path, FLAGS.out_path,
FLAGS.tmp_path)
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import smile as sm
from smile import flags
from smile import logging
flags.DEFINE_string("param", "default_value", "A general flag.")
with flags.Subcommand("echo", dest="action"):
flags.DEFINE_string("echo_text", "", "The text to be echoed out.")
with flags.Subcommand("echo_bool", dest="action"):
flags.DEFINE_bool("just_do_it", False, "some help infomation")
FLAGS = flags.FLAGS
def main(_):
"""Print out the FLAGS in the main function."""
logging.info("param = %s", FLAGS.param)
if FLAGS.action == "echo":
logging.warning(FLAGS.echo_text)
elif FLAGS.action == "echo_bool":
logging.info("Just do it? %s", "Yes!" if FLAGS.just_do_it else "No :(")
if __name__ == "__main__":
sm.app.run()
import unittest
from smile import flags
flags.DEFINE_string("string_foo", "default_val", "HelpString")
flags.DEFINE_integer("int_foo", 42, "HelpString")
flags.DEFINE_float("float_foo", 42.0, "HelpString")
flags.DEFINE_boolean("bool_foo", True, "HelpString")
flags.DEFINE_boolean("bool_negation", True, "HelpString")
flags.DEFINE_boolean("bool-dash-negation", True, "HelpString")
flags.DEFINE_boolean("bool_a", False, "HelpString")
flags.DEFINE_boolean("bool_c", False, "HelpString")
flags.DEFINE_boolean("bool_d", True, "HelpString")
flags.DEFINE_bool("bool_e", True, "HelpString")
with flags.Subcommand("dummy_action", dest="action"):
pass
with flags.Subcommand("move", dest="action"):
flags.DEFINE_string("move_string", "default", "help")
flags.DEFINE_bool("move_bool", True, "HelpString")
with flags.Subcommand("dummy_object", dest="object"):
pass
with flags.Subcommand("wa", dest="object"):
flags.DEFINE_string("move_wa_string", "default_wa", "help")
flags.DEFINE_bool("move_wa_bool", False, "HelpString")