def test_fails_if_unknown_files_in_config_folder(self,
fake_snakemake: Path,
mocker: MockerFixture):
o = fake_snakemake / "old-style"
(o / "config" / "random").touch()
with pytest.raises(RunError):
output.retrofit_output(o, [o / "config/config.yaml"])
def test_fails_when_user_input_not_yes(self, fake_snakemake: Path,
mocker: MockerFixture):
o = fake_snakemake / "old-style"
mocker.patch("builtins.input", return_value="")
out = output.retrofit_output(o, [o / "config/config.yaml"])
assert out is False
assert (o / "config").exists()
def test_successfully_retrofits(self, fake_snakemake: Path,
mocker: MockerFixture):
o = fake_snakemake / "old-style"
mocker.patch("builtins.input", return_value="yes")
out = output.retrofit_output(o, [o / "config/config.yaml"])
assert out is True
assert not (o / "config").exists()
assert dirlen(o / "app1") == 1
with (o / ".snakebids").open() as f:
assert json.load(f)["mode"] == "bidsapp"
def test_fails_if_no_config_files_provided(self, fake_snakemake: Path,
mocker: MockerFixture):
o = fake_snakemake / "old-style"
with pytest.raises(RunError):
output.retrofit_output(o, [])
def test_fails_when_snakebids_file_exists(self, fake_snakemake: Path,
mocker: MockerFixture):
o = fake_snakemake / "old-style"
(o / ".snakebids").touch()
with pytest.raises(RunError):
output.retrofit_output(o, [o / "config/config.yaml"])