def audit(context, request):
fr = FieldedResponse(
_meta={
'params_parser': ParamsParser(request)
},
response_fields=[
TitleResponseField(
title=AUDIT_TITLE
),
TypeResponseField(
at_type=[AUDIT_TITLE]
),
IDResponseField(),
SearchBaseResponseField(),
ContextResponseField(),
AuditMatrixWithFacetsResponseField(
default_item_types=DEFAULT_ITEM_TYPES
),
NotificationResponseField(),
FiltersResponseField(),
TypeOnlyClearFiltersResponseField(),
DebugQueryResponseField()
]
)
return fr.render()
def test_searches_fields_type_only_clear_filter_response_field_get_search_term_or_types_from_query_string(
dummy_parent):
dummy_parent._meta['params_parser']._request.environ['QUERY_STRING'] = (
'type=Experiment&assay_title=Histone+ChIP-seq&award.project=Roadmap'
'&limit=all&frame=embedded&restricted!=*&searchTerm=ctcf')
from snovault.elasticsearch.searches.fields import TypeOnlyClearFiltersResponseField
tcfr = TypeOnlyClearFiltersResponseField()
tcfr.parent = dummy_parent
search_term_or_types = tcfr._get_search_term_or_types_from_query_string()
# Matrix/report clear filters should always always returns types.
assert search_term_or_types == [('type', 'Experiment')]
tcfr.parent._meta['params_parser']._request.environ['QUERY_STRING'] = (
'type=Experiment&assay_title=Histone+ChIP-seq&award.project=Roadmap'
'&limit=all&frame=embedded&restricted!=*')
search_term_or_types = tcfr._get_search_term_or_types_from_query_string()
assert search_term_or_types == [('type', 'Experiment')]
def summary(context, request):
fr = FieldedResponse(
_meta={
'params_parser': ParamsParser(request)
},
response_fields=[
TitleResponseField(
title=SUMMARY_TITLE
),
TypeResponseField(
at_type=[SUMMARY_TITLE]
),
IDResponseField(),
SearchBaseResponseField(),
ContextResponseField(),
BasicMatrixWithFacetsResponseField(
default_item_types=DEFAULT_ITEM_TYPES,
matrix_definition_name=SUMMARY_MATRIX
),
NotificationResponseField(),
FiltersResponseField(),
TypeOnlyClearFiltersResponseField(),
DebugQueryResponseField()
]
)
return fr.render()
def mouse_development(context, request):
fr = FieldedResponse(
_meta={
'params_parser': ParamsParser(request)
},
response_fields=[
TitleResponseField(
title='Mouse Development Matrix'
),
TypeResponseField(
at_type=['MouseDevelopmentMatrix']
),
IDResponseField(),
SearchBaseResponseField(),
ContextResponseField(),
BasicMatrixWithFacetsResponseField(
default_item_types=DEFAULT_ITEM_TYPES,
matrix_definition_name='mouse_development'
),
NotificationResponseField(),
FiltersResponseField(),
TypeOnlyClearFiltersResponseField(),
DebugQueryResponseField()
]
)
return fr.render()
def entex_matrix(context, request):
fr = FieldedResponse(
_meta={
'params_parser': ParamsParser(request)
},
response_fields=[
TitleResponseField(
title='Epigenomes from four individuals (ENTEx)'
),
TypeResponseField(
at_type=['EntexMatrix']
),
IDResponseField(),
SearchBaseResponseField(),
ContextResponseField(),
MissingMatrixWithFacetsResponseField(
default_item_types=DEFAULT_ITEM_TYPES,
matrix_definition_name='entex'
),
NotificationResponseField(),
FiltersResponseField(),
TypeOnlyClearFiltersResponseField(),
DebugQueryResponseField()
]
)
return fr.render()
def report(context, request):
fr = FieldedResponse(
_meta={
'params_parser': ParamsParser(request)
},
response_fields=[
TitleResponseField(
title=REPORT_TITLE
),
TypeResponseField(
at_type=[REPORT_TITLE]
),
IDResponseField(),
ContextResponseField(),
BasicReportWithFacetsResponseField(),
AllResponseField(),
NotificationResponseField(),
FiltersResponseField(),
TypeOnlyClearFiltersResponseField(),
ColumnsResponseField(),
NonSortableResponseField(),
SortResponseField(),
DebugQueryResponseField()
]
)
return fr.render()
def encore_rna_seq_matrix(context, request):
fr = FieldedResponse(
_meta={'params_parser': ParamsParser(request)},
response_fields=[
TitleResponseField(title='ENCORE RNA-seq Matrix'),
TypeResponseField(at_type=['EncoreRnaSeqMatrix']),
IDResponseField(),
SearchBaseResponseField(),
ContextResponseField(),
MissingMatrixWithFacetsResponseField(
default_item_types=DEFAULT_ITEM_TYPES,
matrix_definition_name='encore_rna_seq_matrix'),
NotificationResponseField(),
FiltersResponseField(),
TypeOnlyClearFiltersResponseField(),
DebugQueryResponseField()
])
return fr.render()
