def cleanup_drmaa_files(self, scheduler_job_id):
filename = os.path.join(Configuration.get_home_dir(),
'.drmaa', str(scheduler_job_id))
startfile = '%s.started' % filename
endfile = '%s.exitcode' % filename
for f in (startfile, endfile):
if os.path.exists(f):
os.unlink(f)
def cleanup_drmaa_files(self, scheduler_job_id):
filename = os.path.join(Configuration.get_home_dir(), '.drmaa',
str(scheduler_job_id))
startfile = '%s.started' % filename
endfile = '%s.exitcode' % filename
for f in (startfile, endfile):
if os.path.exists(f):
os.unlink(f)
from soma_workflow.configuration import Configuration
# from soma_workflow.connection import RemoteConnection
user = '******'
try:
import pwd
user = pwd.getpwuid(os.getuid()).pw_name
except Exception:
pass
controller = WorkflowController("Gabriel", user)
# FileTransfer creation for input files
file1 = FileTransfer(is_input=True,
client_path="%s/create_file.py" %
Configuration.get_home_dir(),
name="script")
file2 = FileTransfer(is_input=True,
client_path="%s/output_file" %
Configuration.get_home_dir(),
name="file created on the server")
# Job and Workflow
run_script = Job(command=["python", file1, file2],
name="copy",
referenced_input_files=[file1],
referenced_output_files=[file2])
workflow = Workflow(jobs=[run_script], dependencies=[])
